RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NQO2P16083 231 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 ASAH1Q13510 395 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 ERV3-1Q14264 604 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 TMEM241Q24JQ0 296 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 C19orf43Q9BQ61 176 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 AJAP1Q9UKB5 411 aaPredicted RBP12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 FBXO4Q9UKT5 387 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 ROBO1Q9Y6N7 1651 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 FAM72CH0Y354 149 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 SIRPB1O00241 398 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 MELTFP08582 738 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 FAM72AQ5TYM5 149 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 FAM72DQ6L9T8 149 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 FAM72BQ86X60 149 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 GALNT16Q8N428 558 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 NEURL3Q96EH8 262 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 SORBS1Q9BX66 1292 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 CLEC5AQ9NY25 188 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 PROCRQ9UNN8 238 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 RPL29P47914 159 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 UBE2MP61081 183 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 PRDX1Q06830 199 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 C1orf140Q5VVS0 124 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 TRAPPC4Q9Y296 219 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 ANKRD36CQ5JPF3 1778 aa12.7□□□□□ -0.38
CCDC88A-201ENST00000263630 RIGQ13278 110 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 LINC00696Q6ZRV3 163 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 MISP3Q96FF7 219 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 C11orf68Q9H3H3 251 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 BCL2L11O43521 198 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 CD99P14209 185 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 HRH1P35367 487 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 MRPS21P82921 87 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 LRRC26Q2I0M4 334 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 TMEM25Q86YD3 366 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 C5orf17Q8NAS9 161 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 RSG1Q9BU20 258 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 A0A1B0GUH1 482 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 MYADML2A6NDP7 307 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 CEBPDP49716 269 aaPredicted RBP12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 SYPL1Q16563 259 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 LEXMQ3ZCV2 418 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 LYG2Q86SG7 212 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 YRDCQ86U90 279 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 ZNF426Q9BUY5 554 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 TAS2R4Q9NYW5 299 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 QDPRP09417 244 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 PVRP15151 417 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 RAB9AP51151 201 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 PERPQ96FX8 193 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 IL21Q9HBE4 155 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 SERPINE3A8MV23 424 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 SELENOFO60613 162 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 PNLIPRP3Q17RR3 467 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 ZNF764Q96H86 408 aaPredicted RBP12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 SLC25A33Q9BSK2 321 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 MANBALQ9NQG1 85 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 ZNFX1Q9P2E3 1918 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 FIGNL2A6NMB9 653 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 MOB4Q9Y3A3 225 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 EIF4E2O60573 245 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 ZP3P21754 424 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 HLA-BQ31612 363 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 ZBTB44Q8NCP5 570 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 NUMBLQ9Y6R0 609 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 M0R1B8 84 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 ACSM6Q6P461 480 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 SLC16A12Q6ZSM3 486 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 FADS6Q8N9I5 356 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 GPR137Q96N19 417 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 CHST8Q9H2A9 424 aa12.69□□□□□ -0.38
CCDC88A-201ENST00000263630 ZBTB25P24278 435 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 PRTGQ2VWP7 1150 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 PARS2Q7L3T8 475 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 Q8IYB0 196 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 CYB5R1Q9UHQ9 305 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 AP4M1O00189 453 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 UBE2L6O14933 153 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 DND1Q8IYX4 353 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 MAP1BP46821 2468 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 PRDX4Q13162 271 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 CORTO00230 105 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 LPAL2Q16609 132 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 SLC36A1Q7Z2H8 476 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 RTTNQ86VV8 2226 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 ATG2BQ96BY7 2078 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 OOEPA6NGQ2 149 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 TBC1D26Q86UD7 250 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 ANKLE1Q8NAG6 615 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 CGGBP1Q9UFW8 167 aaPredicted RBP12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 TRAT1Q6PIZ9 186 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 TMEM37Q8WXS4 190 aa12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 YBX1P67809 324 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 BCL7CQ8WUZ0 217 aaPredicted RBP12.68□□□□□ -0.38
CCDC88A-201ENST00000263630 DRGXA6NNA5 263 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 PGA3P0DJD8 388 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 CLDN2P57739 230 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 ICAM5Q9UMF0 924 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 ELOA3CA0A087WX78 387 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 DAPP51397 102 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms