RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 PGAP1Q75T13 922 aa13.58□□□□□ -0.24
CLN3-255ENST00000637100 CYP4Z1Q86W10 505 aa13.58□□□□□ -0.24
CLN3-255ENST00000637100 PNLDC1Q8NA58 520 aaKnown RBP13.58□□□□□ -0.24
CLN3-255ENST00000637100 ZSCAN4Q8NAM6 433 aaPredicted RBP13.58□□□□□ -0.24
CLN3-255ENST00000637100 GATAD2BQ8WXI9 593 aa13.58□□□□□ -0.24
CLN3-255ENST00000637100 SLCO4A1Q96BD0 722 aa13.58□□□□□ -0.24
CLN3-255ENST00000637100 RCN3Q96D15 328 aa13.58□□□□□ -0.24
CLN3-255ENST00000637100 ATF6BQ99941 703 aa13.58□□□□□ -0.24
CLN3-255ENST00000637100 PCGF1Q9BSM1 259 aa13.58□□□□□ -0.24
CLN3-255ENST00000637100 TRIM15Q9C019 465 aa13.58□□□□□ -0.24
CLN3-255ENST00000637100 FN3KRPQ9HA64 309 aa13.58□□□□□ -0.24
CLN3-255ENST00000637100 KCNG2Q9UJ96 466 aa13.58□□□□□ -0.24
CLN3-255ENST00000637100 RNF114Q9Y508 228 aa13.58□□□□□ -0.24
CLN3-255ENST00000637100 CAPN7Q9Y6W3 813 aa13.58□□□□□ -0.24
CLN3-255ENST00000637100 TRBV4-1A0A0J9YWV2 114 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 UNC119BA6NIH7 251 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 CD300LBA8K4G0 201 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 GPR137BO60478 399 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 ECDO95905 644 aaPredicted RBP13.57□□□□□ -0.24
CLN3-255ENST00000637100 TROVE2P10155 538 aaKnown RBP eCLIP13.57□□□□□ -0.24
CLN3-255ENST00000637100 HOXA4Q00056 320 aaPredicted RBP13.57□□□□□ -0.24
CLN3-255ENST00000637100 MALLQ13021 153 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 TAF9Q16594 264 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 TEX36Q5VZQ5 186 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 METAP1DQ6UB28 335 aaPredicted RBP13.57□□□□□ -0.24
CLN3-255ENST00000637100 HACD2Q6Y1H2 254 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 GCSAMQ8N6F7 178 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 C19orf18Q8NEA5 215 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 MAP6Q96JE9 813 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 CCT8L2Q96SF2 557 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 DDOQ99489 341 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 MRPL22Q9NWU5 206 aaKnown RBP13.57□□□□□ -0.24
CLN3-255ENST00000637100 KIF17Q9P2E2 1029 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 POLR1DQ9Y2S0 133 aa13.57□□□□□ -0.24
CLN3-255ENST00000637100 TRAV38-1A0A0B4J264 116 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 F5H5K5 113 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 IDH3BO43837 385 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 IGHV4-59P01825 116 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 LCATP04180 440 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 CA6P23280 308 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 PRSS12P56730 875 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 SPERTQ8NA61 448 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 LY6G5BQ8NDX9 201 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 ERMAPQ96PL5 475 aaPredicted RBP13.56□□□□□ -0.24
CLN3-255ENST00000637100 NMNAT3Q96T66 252 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 PITX2Q99697 317 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 SRA1Q9HD15 236 aaKnown RBP13.56□□□□□ -0.24
CLN3-255ENST00000637100 UFSP2Q9NUQ7 469 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 MRPL15Q9P015 296 aaKnown RBP13.56□□□□□ -0.24
CLN3-255ENST00000637100 ABCD2Q9UBJ2 740 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 KPTNQ9Y664 436 aa13.56□□□□□ -0.24
CLN3-255ENST00000637100 OR6C68A6NDL8 312 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 OOEPA6NGQ2 149 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 SLC22A31A6NKX4 558 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 ADAM20O43506 726 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 TSPAN9O75954 239 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 HIST1H1CP16403 213 aaKnown RBP13.55□□□□□ -0.24
CLN3-255ENST00000637100 ANOS1P23352 680 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 SLC7A2P52569 658 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 TPTEP56180 551 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 ZNF92Q03936 586 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 OR8G1Q15617 311 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 Q6ZSV7 163 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 HDXQ7Z353 690 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 FAM90A1Q86YD7 464 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 LINC00346Q8IVM7 164 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 PIP4P2Q8N4L2 257 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 SPRYD4Q8WW59 207 aaPredicted RBP13.55□□□□□ -0.24
CLN3-255ENST00000637100 TECTBQ96PL2 329 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 OR52D1Q9H346 318 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 TNFRSF19Q9NS68 423 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 DCAF13Q9NV06 445 aaKnown RBP13.55□□□□□ -0.24
CLN3-255ENST00000637100 FGFR1OP2Q9NVK5 253 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 AURKCQ9UQB9 309 aa13.55□□□□□ -0.24
CLN3-255ENST00000637100 A0A0U1RQK1 487 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 M0R135 149 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 NDUFAB1O14561 156 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 RENP00797 406 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 SEMG1P04279 462 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 COX4I1P13073 169 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 SLC6A6P31641 620 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 DBPQ10586 325 aaPredicted RBP13.54□□□□□ -0.24
CLN3-255ENST00000637100 PCK2Q16822 640 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 SNAI3Q3KNW1 292 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 METTL11BQ5VVY1 283 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 SFRP4Q6FHJ7 346 aaPredicted RBP13.54□□□□□ -0.24
CLN3-255ENST00000637100 GDPGP1Q6ZNW5 385 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 C11orf53Q8IXP5 236 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 NPRL2Q8WTW4 380 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 SPSB4Q96A44 273 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 ZNF799Q96GE5 643 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 CNTD2Q9H8S5 307 aa13.54□□□□□ -0.24
CLN3-255ENST00000637100 RPUSD1Q9UJJ7 312 aaKnown RBP13.54□□□□□ -0.24
CLN3-255ENST00000637100 FAM32AQ9Y421 112 aaKnown RBP13.54□□□□□ -0.24
CLN3-255ENST00000637100 C5orf63A6NC05 138 aa13.53□□□□□ -0.24
CLN3-255ENST00000637100 DVL1O14640 695 aa13.53□□□□□ -0.24
CLN3-255ENST00000637100 GSTA4O15217 222 aa13.53□□□□□ -0.24
CLN3-255ENST00000637100 NOS3P29474 1203 aa13.53□□□□□ -0.24
CLN3-255ENST00000637100 GSSP48637 474 aa13.53□□□□□ -0.24
CLN3-255ENST00000637100 CENPAP49450 140 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms