RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 ARGFXA6NJG6 315 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 F5H5K5 113 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 SYNGR4O95473 234 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 CSF1P09603 554 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 PSMB1P20618 241 aaKnown RBP19.37■□□□□ 0.69
PNKP-220ENST00000627232 FAUP35544 74 aaKnown RBP19.37■□□□□ 0.69
PNKP-220ENST00000627232 TCF15Q12870 199 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 RAB12Q6IQ22 244 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 ABHD3Q8WU67 409 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 NKX3-1Q99801 234 aaPredicted RBP19.37■□□□□ 0.69
PNKP-220ENST00000627232 GHITMQ9H3K2 345 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 RNF122Q9H9V4 155 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 SCPEP1Q9HB40 452 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 GPR35Q9HC97 309 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 RANGRFQ9HD47 186 aaPredicted RBP19.37■□□□□ 0.69
PNKP-220ENST00000627232 EMC3Q9P0I2 261 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 MUC3AQ02505 3323 aa19.37■□□□□ 0.69
PNKP-220ENST00000627232 METTL21EPA6NDL7 271 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 A8MV72 311 aaPredicted RBP19.36■□□□□ 0.69
PNKP-220ENST00000627232 M0R135 149 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 SGCEO43556 437 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 GMDSO60547 372 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 LIPCP11150 499 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 ABOP16442 354 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 CRYGSP22914 178 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 TGIF1Q15583 401 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 NRN1LQ496H8 165 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 OR5AS1Q8N127 324 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 ZFP62Q8NB50 900 aaPredicted RBP19.36■□□□□ 0.69
PNKP-220ENST00000627232 GPX8Q8TED1 209 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 HAS2Q92819 552 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 ZNF799Q96GE5 643 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 FOXB1Q99853 325 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 ACKR4Q9NPB9 350 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 POU2F3Q9UKI9 436 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 MCTS1Q9ULC4 181 aaKnown RBP19.36■□□□□ 0.69
PNKP-220ENST00000627232 V9GYS6 101 aa19.36■□□□□ 0.69
PNKP-220ENST00000627232 SYNGR3O43761 229 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 SCGNO76038 276 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 ACTL6AO96019 429 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 ANOS1P23352 680 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 THBS4P35443 961 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 ZNF93P35789 620 aaPredicted RBP19.35■□□□□ 0.69
PNKP-220ENST00000627232 SLC6A9P48067 706 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 PCBD1P61457 104 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 PPIAP62937 165 aaKnown RBP19.35■□□□□ 0.69
PNKP-220ENST00000627232 CEACAM16Q2WEN9 425 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 ATP1A1-AS1Q5TC04 95 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 DRAM2Q6UX65 266 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 C10orf35Q96D05 121 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 ZNF486Q96H40 463 aaPredicted RBP19.35■□□□□ 0.69
PNKP-220ENST00000627232 LYZL4Q96KX0 146 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 ALKBH3Q96Q83 286 aaPredicted RBP19.35■□□□□ 0.69
PNKP-220ENST00000627232 SOX7Q9BT81 388 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 C20orf85Q9H1P6 137 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 PARPBPQ9NWS1 579 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 ING3Q9NXR8 418 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 NOSIPQ9Y314 301 aaKnown RBP19.35■□□□□ 0.69
PNKP-220ENST00000627232 ALX3O95076 343 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 ACTBP60709 375 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 ACTG1P63261 375 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 QRFPP83859 136 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 CD83Q01151 205 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 SRYQ05066 204 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 PMPCAQ10713 525 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 GSG1Q2KHT4 349 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 TMEM255AQ5JRV8 349 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 SFRP4Q6FHJ7 346 aaPredicted RBP19.35■□□□□ 0.69
PNKP-220ENST00000627232 ZNF627Q7L945 461 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 NAA40Q86UY6 237 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 OR52H1Q8NGJ2 320 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 OR1F12Q8NHA8 337 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 NUDT16L1Q9BRJ7 211 aaKnown RBP19.35■□□□□ 0.69
PNKP-220ENST00000627232 OR10A2Q9H208 303 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 SLCO5A1Q9H2Y9 848 aa19.35■□□□□ 0.69
PNKP-220ENST00000627232 PAIP2BQ9ULR5 123 aaKnown RBP19.35■□□□□ 0.69
PNKP-220ENST00000627232 PTPRBP23467 1997 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 OR6C65A6NJZ3 312 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 ZNF724A8MTY0 619 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 E9PLN8 166 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 PRAF2O60831 178 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 MRPL33O75394 65 aaKnown RBP19.34■□□□□ 0.69
PNKP-220ENST00000627232 MTRF1O75570 445 aaKnown RBP19.34■□□□□ 0.69
PNKP-220ENST00000627232 DHRS3O75911 302 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 NKX2-5P52952 324 aaPredicted RBP19.34■□□□□ 0.69
PNKP-220ENST00000627232 SLC10A1Q14973 349 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 PCGF3Q3KNV8 242 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 KRTAP27-1Q3LI81 207 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 OR2W3Q7Z3T1 314 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 FAM109AQ8N4B1 249 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 SSC4DQ8WTU2 575 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 FAM46BQ96A09 425 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 DMRTB1Q96MA1 342 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 TRAF4Q9BUZ4 470 aaPredicted RBP19.34■□□□□ 0.69
PNKP-220ENST00000627232 MED28Q9H204 178 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 MCUBQ9NWR8 336 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 TIMM10BQ9Y5J6 103 aa19.34■□□□□ 0.69
PNKP-220ENST00000627232 OTOGLQ3ZCN5 2332 aa19.33■□□□□ 0.69
PNKP-220ENST00000627232 OR6C6A6NF89 314 aa19.33■□□□□ 0.68
PNKP-220ENST00000627232 A6NL46 340 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms