RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 IGFBP1P08833 259 aaPredicted RBP3.51□□□□□ -1.85
LINC00540-201ENST00000611481 ADRA2AP08913 450 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 ANXA4P09525 319 aaPredicted RBP3.51□□□□□ -1.85
LINC00540-201ENST00000611481 NAGAP17050 411 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 NT5EP21589 574 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 MSR1P21757 451 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 CBLP22681 906 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 RPL3P39023 403 aaKnown RBP3.51□□□□□ -1.85
LINC00540-201ENST00000611481 CCR4P51679 360 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 LIM2P55344 173 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 CLDN17P56750 224 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 TMEM33P57088 247 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 TBPL1P62380 186 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 HMGCS1Q01581 520 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 EGFEM1PQ0D2K5 195 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 TRAP1Q12931 704 aaKnown RBP3.51□□□□□ -1.85
LINC00540-201ENST00000611481 SNTA1Q13424 505 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 CUL1Q13616 776 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 EXOSC2Q13868 293 aaKnown RBP3.51□□□□□ -1.85
LINC00540-201ENST00000611481 NNATQ16517 81 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 SYPL1Q16563 259 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 PPP1R3AQ16821 1122 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 ANKRD22Q5VYY1 191 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 PTRHD1Q6GMV3 140 aaKnown RBP3.51□□□□□ -1.85
LINC00540-201ENST00000611481 FAM122CQ6P4D5 195 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 C9orf139Q6ZV77 190 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 PID1Q7Z2X4 250 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 COX8CQ7Z4L0 72 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 COMTD1Q86VU5 262 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 PTOV1Q86YD1 416 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 OFCC1Q8IZS5 231 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 PARP8Q8N3A8 854 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 TMEM86BQ8N661 226 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 ZSCAN4Q8NAM6 433 aaPredicted RBP3.51□□□□□ -1.85
LINC00540-201ENST00000611481 OR4F17Q8NGA8 305 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 OR4C5Q8NGB2 326 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 OR52E2Q8NGJ4 325 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 KCNG3Q8TAE7 436 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 PIGCQ92535 297 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 DYRK2Q92630 601 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 RDH5Q92781 318 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 HGDQ93099 445 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 YIPF5Q969M3 257 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 EFHD2Q96C19 240 aaPredicted RBP3.51□□□□□ -1.85
LINC00540-201ENST00000611481 FAM210AQ96ND0 272 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 OR4F4Q96R69 305 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 DOK1Q99704 481 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 AGPAT1Q99943 283 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 C19orf43Q9BQ61 176 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF670Q9BS34 389 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 CHID1Q9BWS9 393 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 AICDAQ9GZX7 198 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 C16orf95Q9H693 158 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 VIPAS39Q9H9C1 493 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 MMP26Q9NRE1 261 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 PRODH2Q9UF12 536 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 PURGQ9UJV8 347 aaKnown RBP3.51□□□□□ -1.85
LINC00540-201ENST00000611481 MRTO4Q9UKD2 239 aaKnown RBP3.51□□□□□ -1.85
LINC00540-201ENST00000611481 RPH3ALQ9UNE2 315 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 WDR45Q9Y484 360 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 ETV7Q9Y603 341 aa3.51□□□□□ -1.85
LINC00540-201ENST00000611481 IGLV5-52A0A0A0MRZ9 124 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 PPIAL4CA0A0B4J2A2 164 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 TEX13DA0A0J9YY54 714 aaPredicted RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 A0A1B0GW55 424 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 A0A1W2PRB8 838 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 SNTNA6NMZ2 147 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 TMEM178BH3BS89 294 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 FGF17O60258 216 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 UGT2B11O75310 529 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 PSIP1O75475 530 aaKnown RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 UPK3AO75631 287 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 FGFR1OPO95684 399 aaKnown RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 AIFM1O95831 613 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 LY6G6CO95867 125 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 CLPSP04118 112 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 MELTFP08582 738 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 DUX4L2P0CJ85 424 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 DUX4L3P0CJ86 424 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 DUX4L5P0CJ88 424 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 DUX4L6P0CJ89 424 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 DUX4L7P0CJ90 424 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 PPIAL4GP0DN37 164 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 ACP2P11117 423 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 UQCRBP14927 111 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 TCN1P20061 433 aaPredicted RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 COX5AP20674 150 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 EDNRAP25101 427 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 UCP1P25874 307 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 IMPA1P29218 277 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 FEN1P39748 380 aaKnown RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 DSCR4P56555 118 aaPredicted RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 RGS8P57771 180 aaPredicted RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 SEC61GP60059 68 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 EMX1Q04741 257 aaPredicted RBP3.5□□□□□ -1.85
LINC00540-201ENST00000611481 LIPEQ05469 1076 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF154Q13106 437 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 CEACAM7Q14002 265 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 KCNJ11Q14654 390 aa3.5□□□□□ -1.85
LINC00540-201ENST00000611481 GANABQ14697 944 aaKnown RBP3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms