RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TRILQ7L0X0 811 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 CT55Q8WUE5 264 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 MS4A5Q9H3V2 200 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 OSGIN1Q9UJX0 560 aa18.48■□□□□ 0.55
UPF1-207ENST00000599848 TCRBV5S1A1TA0A578 114 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 ALG1L2C9J202 215 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 NKAIN4Q8IVV8 208 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 ANKRD53Q8N9V6 530 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 C17orf50Q8WW18 174 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 C5orf67F2Z3F1 127 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 CHEK1O14757 476 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 COX7A2P2O60397 106 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 ZXDAP98168 799 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 SLC17A1Q14916 467 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 FAM26EQ8N5C1 309 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 VN1R1Q9GZP7 353 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 PPP1R3CQ9UQK1 317 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 A3GALT2U3KPV4 340 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 SERTM1A2A2V5 107 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 CTSLP07711 333 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 MC2RQ01718 297 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 SFTPA2Q8IWL1 248 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 SFTPA1Q8IWL2 248 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 C1orf174Q8IYL3 243 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 SLC25A19Q9HC21 320 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 MTCH1Q9NZJ7 389 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 SSC5DA1L4H1 1573 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 TUBAL3A6NHL2 446 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 DNASE2O00115 360 aaPredicted RBP18.47■□□□□ 0.55
UPF1-207ENST00000599848 AQP7O14520 342 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 ADTRPQ96IZ2 230 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 A0A087WUJ7 227 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 UPK1AO00322 258 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 FZD6O60353 706 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 ANKRD34CP0C6C1 535 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 S100A4P26447 101 aaKnown RBP18.47■□□□□ 0.55
UPF1-207ENST00000599848 OPRL1P41146 370 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 RAB5CP51148 216 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 TMEM217Q8N7C4 229 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 OR1L3Q8NH93 324 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 TMEM208Q9BTX3 173 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 BANF2Q9H503 90 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 TMEM231Q9H6L2 316 aa18.47■□□□□ 0.55
UPF1-207ENST00000599848 SEBOXQ9HB31 216 aaPredicted RBP18.47■□□□□ 0.55
UPF1-207ENST00000599848 SNRNP70P08621 437 aaKnown RBP18.46■□□□□ 0.55
UPF1-207ENST00000599848 OR4A8P0C604 315 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 SSBP1Q04837 148 aaKnown RBP18.46■□□□□ 0.55
UPF1-207ENST00000599848 PAQR6Q6TCH4 344 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 RHOXF1Q8NHV9 184 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 PINX1Q96BK5 328 aaKnown RBP18.46■□□□□ 0.55
UPF1-207ENST00000599848 PHIPQ8WWQ0 1821 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 MEIOCA2RUB1 952 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 SERPINE3A8MV23 424 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 RAB27BO00194 218 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 CTRB1P17538 263 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 CTRB2Q6GPI1 263 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 MED30Q96HR3 178 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 MMP28Q9H239 520 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 C12orf10Q9HB07 376 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 MYH9P35579 1960 aaKnown RBP18.46■□□□□ 0.55
UPF1-207ENST00000599848 PCSK6P29122 969 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 EBPQ15125 230 aaKnown RBP18.46■□□□□ 0.55
UPF1-207ENST00000599848 APH1BQ8WW43 257 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 RBFOX1Q9NWB1 397 aaKnown RBP18.46■□□□□ 0.55
UPF1-207ENST00000599848 PURGQ9UJV8 347 aaKnown RBP18.46■□□□□ 0.55
UPF1-207ENST00000599848 A0A1W2PN81 502 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 SEC14L6B5MCN3 397 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 COX5AP20674 150 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 CHRNA7P36544 502 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 BHLHA15Q7RTS1 189 aaPredicted RBP18.46■□□□□ 0.55
UPF1-207ENST00000599848 PRSS42Q7Z5A4 293 aa18.46■□□□□ 0.55
UPF1-207ENST00000599848 PUS1Q9Y606 427 aaKnown RBP eCLIP18.46■□□□□ 0.55
UPF1-207ENST00000599848 NUP98P52948 1817 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 F2RL2O00254 374 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 HIST1H1CP16403 213 aaKnown RBP18.45■□□□□ 0.54
UPF1-207ENST00000599848 Q56UQ5 140 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 NUBPLQ8TB37 319 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 ZNF2Q9BSG1 426 aaPredicted RBP18.45■□□□□ 0.54
UPF1-207ENST00000599848 UCK1Q9HA47 277 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 MED29Q9NX70 200 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 CGGBP1Q9UFW8 167 aaPredicted RBP18.45■□□□□ 0.54
UPF1-207ENST00000599848 MYH6P13533 1939 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 STUMQ69YW2 141 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 TM4SF19Q96DZ7 209 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 GALNT9Q9HCQ5 603 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 CA10Q9NS85 328 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 OR6C3Q9NZP0 311 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 TIGD3Q6B0B8 471 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 ZNF574Q6ZN55 896 aaPredicted RBP18.45■□□□□ 0.54
UPF1-207ENST00000599848 BPIFCQ8NFQ6 507 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 LPAR3Q9UBY5 353 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 TSPAN7P41732 249 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 SSX9Q7RTT3 188 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 ST3GAL6Q9Y274 331 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 TOGARAM1Q9Y4F4 1720 aa18.45■□□□□ 0.54
UPF1-207ENST00000599848 CXXC4Q9H2H0 198 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 FADS1O60427 444 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 RPA2P15927 270 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 HYAL4Q2M3T9 481 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 KRTCAP3Q53RY4 240 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms