RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 MS4A3Q96HJ5 214 aa13.41□□□□□ -0.26
UPF1-206ENST00000598471 C1QTNF5Q9BXJ0 243 aa13.41□□□□□ -0.26
UPF1-206ENST00000598471 RGCCQ9H4X1 137 aa13.41□□□□□ -0.26
UPF1-206ENST00000598471 DHDHQ9UQ10 334 aa13.41□□□□□ -0.26
UPF1-206ENST00000598471 TRBV5-5A0A0J9YX44 114 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 MTRF1O75570 445 aaKnown RBP13.4□□□□□ -0.26
UPF1-206ENST00000598471 IGLV1-44P01699 117 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 CFL1P23528 166 aaKnown RBP13.4□□□□□ -0.26
UPF1-206ENST00000598471 MYL9P24844 172 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 VBP1P61758 197 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 NCS1P62166 190 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 MALLQ13021 153 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 GFOD2Q3B7J2 385 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 ZMAT1Q5H9K5 638 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 XKRXQ6PP77 449 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 USP43Q70EL4 1123 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 DOK3Q7L591 496 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 NAA40Q86UY6 237 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 ZNF808Q8N4W9 903 aaPredicted RBP13.4□□□□□ -0.26
UPF1-206ENST00000598471 OR5L1Q8NGL2 311 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 OR13C3Q8NGS6 347 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 OR13C5Q8NGS8 318 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 OR51E1Q8TCB6 317 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 RGP1Q92546 391 aaPredicted RBP13.4□□□□□ -0.26
UPF1-206ENST00000598471 AKAP1Q92667 903 aaKnown RBP eCLIP13.4□□□□□ -0.26
UPF1-206ENST00000598471 PPP1R14AQ96A00 147 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 OR14A2Q96R54 314 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 KCNS3Q9BQ31 491 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 CENPOQ9BU64 300 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 C1QTNF6Q9BXI9 259 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 GPR84Q9NQS5 396 aa13.4□□□□□ -0.26
UPF1-206ENST00000598471 ZNF462Q96JM2 2506 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 CFAP46Q8IYW2 2715 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 SC5DO75845 299 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 RAF1P04049 648 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 CELA3BP08861 270 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 CCL2P13500 99 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 SOX2P48431 317 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 ZNF83P51522 516 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 RPS11P62280 158 aaKnown RBP eCLIP13.39□□□□□ -0.27
UPF1-206ENST00000598471 SORDQ00796 357 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 HGFACQ04756 655 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 SNAI3Q3KNW1 292 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 ALKBH2Q6NS38 261 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 UNQ9370/PRO34162Q6UXP9 181 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 TMEM91Q6ZNR0 172 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 COLCA1Q6ZS62 124 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 RDH10Q8IZV5 341 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 TRMT61AQ96FX7 289 aaKnown RBP13.39□□□□□ -0.27
UPF1-206ENST00000598471 SLITRK2Q9H156 845 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 OPA3Q9H6K4 179 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 NGBQ9NPG2 151 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 TBCCD1Q9NVR7 557 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 NDRG3Q9UGV2 375 aa13.39□□□□□ -0.27
UPF1-206ENST00000598471 IGHV1-18A0A0C4DH31 117 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 NKX2-6A6NCS4 301 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 M0R1B8 84 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 ATE1O95260 518 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 CLDN14O95500 239 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 CECR9P0C854 216 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 CCL1P22362 96 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 CALRP27797 417 aaKnown RBP13.38□□□□□ -0.27
UPF1-206ENST00000598471 SERPINB10P48595 397 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 HSD17B12Q53GQ0 312 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 OR10AC1Q8NH08 325 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 ITFG2Q969R8 447 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 TMEM106AQ96A25 262 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 REEP6Q96HR9 211 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 FAM71F1Q96KD3 344 aaPredicted RBP13.38□□□□□ -0.27
UPF1-206ENST00000598471 DERL3Q96Q80 235 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 MED18Q9BUE0 208 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 DCSTAMPQ9H295 470 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 PLEKHA1Q9HB21 404 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 ZNF319Q9P2F9 582 aa13.38□□□□□ -0.27
UPF1-206ENST00000598471 ESPL1Q14674 2120 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 A0A1B0GTI1 187 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 H3BSH0 61 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 ICMTO60725 284 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 ZG16O60844 167 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 IGLV3-1P01715 115 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 CRYAAP02489 173 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 UCHL1P09936 223 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 ZNF20P17024 532 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 PCSK6P29122 969 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 MTNR1BP49286 362 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 INSL4Q14641 139 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 SPCS2Q15005 226 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 GLYATL3Q5SZD4 288 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 MYPOPQ86VE0 399 aaPredicted RBP13.37□□□□□ -0.27
UPF1-206ENST00000598471 WFDC8Q8IUA0 241 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 C1orf174Q8IYL3 243 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 OR51A4Q8NGJ6 313 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 SGK3Q96BR1 496 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 NOX4Q9NPH5 578 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 CKLFQ9UBR5 152 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 SPEF1Q9Y4P9 236 aa13.37□□□□□ -0.27
UPF1-206ENST00000598471 MYO7BQ6PIF6 2116 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 TRBV5-7A0A0A0MS05 114 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 LOC390937A0A1W2PQ73 354 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 DHRS7CA6NNS2 312 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms