RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 A0A1B0GVI7 797 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 C5orf63A6NC05 138 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 ZG16O60844 167 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 SC5DO75845 299 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 PPP3CBP16298 524 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 FGF9P31371 208 aaPredicted RBP12.7□□□□□ -0.38
VRK3-212ENST00000596814 ZNF83P51522 516 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 NCS1P62166 190 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 CDSNQ15517 529 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 C3orf36Q3SXR2 165 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 Q499Y3 187 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 C22orf42Q6IC83 251 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 ALKBH2Q6NS38 261 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 SSX8Q7RTT4 187 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 PAQR4Q8N4S7 273 aaPredicted RBP12.7□□□□□ -0.38
VRK3-212ENST00000596814 OR51A4Q8NGJ6 313 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 OR51E1Q8TCB6 317 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 OR14A2Q96R54 314 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 KCNS3Q9BQ31 491 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 RNF167Q9H6Y7 350 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 GSTK1Q9Y2Q3 226 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 RELNP78509 3460 aa12.7□□□□□ -0.38
VRK3-212ENST00000596814 IGHV1-18A0A0C4DH31 117 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 TRBV5-5A0A0J9YX44 114 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 ZNF879B4DU55 563 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 SLC22A1O15245 554 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 GATBO75879 557 aaKnown RBP12.69□□□□□ -0.38
VRK3-212ENST00000596814 OCM2P0CE71 109 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 AGAP20933 346 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 ZMAT1Q5H9K5 638 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 XKRXQ6PP77 449 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 PAMR1Q6UXH9 720 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 COLCA1Q6ZS62 124 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 CEACAM19Q7Z692 300 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 ITLN2Q8WWU7 325 aaPredicted RBP12.69□□□□□ -0.38
VRK3-212ENST00000596814 THRSPQ92748 146 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 APOBEC3DQ96AK3 386 aaPredicted RBP12.69□□□□□ -0.38
VRK3-212ENST00000596814 GPR84Q9NQS5 396 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 NPAP1Q9NZP6 1156 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 DHDHQ9UQ10 334 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 ZNF462Q96JM2 2506 aa12.69□□□□□ -0.38
VRK3-212ENST00000596814 A0A1B0GTI1 187 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 M0R1B8 84 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 XRCC2O43543 280 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 SYT7O43581 403 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 IGLV3-1P01715 115 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 CCL1P22362 96 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 MAPK3P27361 379 aaPredicted RBP12.68□□□□□ -0.38
VRK3-212ENST00000596814 TGFBR1P36897 503 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 WNT5AP41221 380 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 SOX2P48431 317 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 ZNF808Q8N4W9 903 aaPredicted RBP12.68□□□□□ -0.38
VRK3-212ENST00000596814 OR13C3Q8NGS6 347 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 KCTD7Q96MP8 289 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 EIF3KQ9UBQ5 218 aaKnown RBP12.68□□□□□ -0.38
VRK3-212ENST00000596814 ZNF391Q9UJN7 358 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 CLDN14O95500 239 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 MAGEB1P43366 347 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 SORDQ00796 357 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 GLYATL3Q5SZD4 288 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 FAM27D1Q5T7N8 215 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 SEZ6L2Q6UXD5 910 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 UNQ9370/PRO34162Q6UXP9 181 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 C22orf34Q6ZV56 151 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 RFPL4BQ6ZWI9 263 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 DOK3Q7L591 496 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 WFDC8Q8IUA0 241 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 ZNF101Q8IZC7 436 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 KBTBD8Q8NFY9 601 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 OR2AE1Q8NHA4 323 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 PHYHIPQ92561 330 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 TMEM106AQ96A25 262 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 ZC3HAV1LQ96H79 300 aaKnown RBP12.68□□□□□ -0.38
VRK3-212ENST00000596814 REEP6Q96HR9 211 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 FAM71F1Q96KD3 344 aaPredicted RBP12.68□□□□□ -0.38
VRK3-212ENST00000596814 LYZL4Q96KX0 146 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 DERL3Q96Q80 235 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 MED18Q9BUE0 208 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 RGCCQ9H4X1 137 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 TBCCD1Q9NVR7 557 aa12.68□□□□□ -0.38
VRK3-212ENST00000596814 J3QW42 95 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 ICMTO60725 284 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 ARL6IP5O75915 188 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 ATE1O95260 518 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 CD2P06729 351 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 UCHL1P09936 223 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 ZNF12P17014 697 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 CALRP27797 417 aaKnown RBP12.67□□□□□ -0.38
VRK3-212ENST00000596814 GRNP28799 593 aaKnown RBP12.67□□□□□ -0.38
VRK3-212ENST00000596814 NAAAQ02083 359 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 TFF3Q07654 80 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 MALLQ13021 153 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 SPCS2Q15005 226 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 USP43Q70EL4 1123 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 NDNFQ8TB73 568 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 AKAP1Q92667 903 aaKnown RBP eCLIP12.67□□□□□ -0.38
VRK3-212ENST00000596814 SGK3Q96BR1 496 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 SOX7Q9BT81 388 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 OR51B6Q9H340 312 aa12.67□□□□□ -0.38
VRK3-212ENST00000596814 NOX4Q9NPH5 578 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms