RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TM2D3Q9BRN9 247 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 SLIRPQ9GZT3 109 aaKnown RBP2.77□□□□□ -1.97
SS18-214ENST00000580003 NEUROG2Q9H2A3 272 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 MTCH1Q9NZJ7 389 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 SLC17A7Q9P2U7 560 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 FHOD3Q2V2M9 1422 aa2.76□□□□□ -1.97
SS18-214ENST00000580003 XKRY2A2RUG3 117 aa2.76□□□□□ -1.97
SS18-214ENST00000580003 C9JVG2 144 aa2.76□□□□□ -1.97
SS18-214ENST00000580003 MFNGO00587 321 aa2.76□□□□□ -1.97
SS18-214ENST00000580003 WBP4O75554 376 aaKnown RBP2.76□□□□□ -1.97
SS18-214ENST00000580003 GATBO75879 557 aaKnown RBP2.76□□□□□ -1.97
SS18-214ENST00000580003 SYKP43405 635 aa2.76□□□□□ -1.97
SS18-214ENST00000580003 KLHL12Q53G59 568 aa2.76□□□□□ -1.97
SS18-214ENST00000580003 HSP90AB3PQ58FF7 597 aa2.76□□□□□ -1.97
SS18-214ENST00000580003 SGPP2Q8IWX5 399 aa2.76□□□□□ -1.97
SS18-214ENST00000580003 SLC38A4Q969I6 547 aa2.76□□□□□ -1.97
SS18-214ENST00000580003 LTBP4Q8N2S1 1624 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP2.75□□□□□ -1.97
SS18-214ENST00000580003 TRBV9A0A0B4J1U6 114 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 A6NDN8 102 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 AP3B1O00203 1094 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 LSM1O15116 133 aaKnown RBP2.75□□□□□ -1.97
SS18-214ENST00000580003 SERPINB7O75635 380 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 CNMDO75829 334 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 LGALS3P17931 250 aaKnown RBP2.75□□□□□ -1.97
SS18-214ENST00000580003 NTF3P20783 257 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 OR1E1P30953 314 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 GALR1P47211 349 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 SELENBP1Q13228 472 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 SLC25A35Q3KQZ1 300 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 CPNE4Q96A23 557 aaPredicted RBP2.75□□□□□ -1.97
SS18-214ENST00000580003 HAUS1Q96CS2 278 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 GPR82Q96P67 336 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 MARVELD1Q9BSK0 173 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 NUP58Q9BVL2 599 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 SLC39A1Q9NY26 324 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 SLC17A4Q9Y2C5 497 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 MMACHCQ9Y4U1 282 aa2.75□□□□□ -1.97
SS18-214ENST00000580003 NLRC5Q86WI3 1866 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 TRBV11-1A0A0K0K1C0 115 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 RNF13O43567 381 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 MT-ND4P03905 459 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 RPN2P04844 631 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 CRISP1P54107 249 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 FAM53BQ14153 422 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 DEGS2Q6QHC5 323 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 RTL4Q6ZR62 310 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 TAS2R42Q7RTR8 314 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 GTPBP8Q8N3Z3 284 aaPredicted RBP2.74□□□□□ -1.97
SS18-214ENST00000580003 OR5K2Q8NHB8 316 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 BTN2A3PQ96KV6 586 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 TOLLIPQ9H0E2 274 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 TMEM165Q9HC07 324 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 RETNQ9HD89 108 aa2.74□□□□□ -1.97
SS18-214ENST00000580003 PCDH11XQ9BZA7 1347 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 IGHV3OR16-9A0A0B4J2B5 98 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 PRAMEF26H0Y7S4 382 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 CIB2O75838 187 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 LSM8O95777 96 aaKnown RBP2.73□□□□□ -1.97
SS18-214ENST00000580003 HPRT1P00492 218 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 HSPD1P10809 573 aaKnown RBP2.73□□□□□ -1.97
SS18-214ENST00000580003 CSNK2A2P19784 350 aaPredicted RBP2.73□□□□□ -1.97
SS18-214ENST00000580003 HTR1DP28221 377 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 POLR2IP36954 125 aaKnown RBP2.73□□□□□ -1.97
SS18-214ENST00000580003 STUMQ69YW2 141 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 CBLN2Q8IUK8 224 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 STK40Q8N2I9 435 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 UBAC2Q8NBM4 344 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 C19orf18Q8NEA5 215 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 GHSRQ92847 366 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 RASD2Q96D21 266 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 SEC22CQ9BRL7 303 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 NUDT9Q9BW91 350 aa2.73□□□□□ -1.97
SS18-214ENST00000580003 NMT2O60551 498 aa2.72□□□□□ -1.97
SS18-214ENST00000580003 TSPOAP1O95153 1857 aa2.72□□□□□ -1.97
SS18-214ENST00000580003 FTH1P02794 183 aa2.72□□□□□ -1.97
SS18-214ENST00000580003 MYL2P10916 166 aa2.72□□□□□ -1.97
SS18-214ENST00000580003 ZNF121P58317 390 aaPredicted RBP2.72□□□□□ -1.97
SS18-214ENST00000580003 ADM2Q7Z4H4 148 aa2.72□□□□□ -1.97
SS18-214ENST00000580003 OR2Z1Q8NG97 314 aa2.72□□□□□ -1.97
SS18-214ENST00000580003 TMEM38AQ9H6F2 299 aa2.72□□□□□ -1.97
SS18-214ENST00000580003 MRM3Q9HC36 420 aaKnown RBP2.72□□□□□ -1.97
SS18-214ENST00000580003 IL37Q9NZH6 218 aa2.72□□□□□ -1.97
SS18-214ENST00000580003 HES2Q9Y543 173 aa2.72□□□□□ -1.97
SS18-214ENST00000580003 TICRRQ7Z2Z1 1910 aa2.72□□□□□ -1.97
SS18-214ENST00000580003 COL22A1Q8NFW1 1626 aaPredicted RBP2.71□□□□□ -1.97
SS18-214ENST00000580003 EIF3HO15372 352 aaKnown RBP eCLIP2.71□□□□□ -1.98
SS18-214ENST00000580003 IGLV7-43P04211 117 aa2.71□□□□□ -1.98
SS18-214ENST00000580003 PFN1P07737 140 aaKnown RBP2.71□□□□□ -1.98
SS18-214ENST00000580003 NDUFA8P51970 172 aa2.71□□□□□ -1.98
SS18-214ENST00000580003 KRTAP6-3Q3LI67 103 aa2.71□□□□□ -1.98
SS18-214ENST00000580003 OR1L1Q8NH94 360 aa2.71□□□□□ -1.98
SS18-214ENST00000580003 ZNF606Q8WXB4 792 aa2.71□□□□□ -1.98
SS18-214ENST00000580003 C20orf24Q9BUV8 137 aa2.71□□□□□ -1.98
SS18-214ENST00000580003 OR7C2O60412 319 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 HUS1O60921 280 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 SCO1O75880 301 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 KLHL2O95198 593 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 MYL9P24844 172 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 RAB7AP51149 207 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms