RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CHD6Q8TD26 2715 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 A0A1B0GUH1 482 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 EPXP11678 715 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 APLNRP35414 380 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 ZNF83P51522 516 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 C4orf17Q53FE4 359 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 YIF1BQ5BJH7 314 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 ZC3HAV1LQ96H79 300 aaKnown RBP21.74■■□□□ 1.07
SHMT1-207ENST00000580002 NOX4Q9NPH5 578 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 IGHV1-18A0A0C4DH31 117 aa21.73■■□□□ 1.07
SHMT1-207ENST00000580002 ZG16O60844 167 aa21.73■■□□□ 1.07
SHMT1-207ENST00000580002 NOL3O60936 208 aaKnown RBP21.73■■□□□ 1.07
SHMT1-207ENST00000580002 CECR9P0C854 216 aa21.73■■□□□ 1.07
SHMT1-207ENST00000580002 OCM2P0CE71 109 aa21.73■■□□□ 1.07
SHMT1-207ENST00000580002 FGF9P31371 208 aaPredicted RBP21.73■■□□□ 1.07
SHMT1-207ENST00000580002 TIMM50Q3ZCQ8 353 aa21.73■■□□□ 1.07
SHMT1-207ENST00000580002 SEZ6L2Q6UXD5 910 aa21.73■■□□□ 1.07
SHMT1-207ENST00000580002 ASB5Q8WWX0 329 aa21.73■■□□□ 1.07
SHMT1-207ENST00000580002 FAM71F1Q96KD3 344 aaPredicted RBP21.73■■□□□ 1.07
SHMT1-207ENST00000580002 C1QTNF5Q9BXJ0 243 aa21.73■■□□□ 1.07
SHMT1-207ENST00000580002 ATPIF1Q9UII2 106 aa21.73■■□□□ 1.07
SHMT1-207ENST00000580002 TRIM64BA6NI03 449 aa21.72■■□□□ 1.07
SHMT1-207ENST00000580002 ZNF879B4DU55 563 aa21.72■■□□□ 1.07
SHMT1-207ENST00000580002 ZNF701M0R085 212 aaPredicted RBP21.72■■□□□ 1.07
SHMT1-207ENST00000580002 ZNF182P17025 639 aaPredicted RBP21.72■■□□□ 1.07
SHMT1-207ENST00000580002 MXD1Q05195 221 aa21.72■■□□□ 1.07
SHMT1-207ENST00000580002 GLYATL3Q5SZD4 288 aa21.72■■□□□ 1.07
SHMT1-207ENST00000580002 ASPHD2Q6ICH7 369 aa21.72■■□□□ 1.07
SHMT1-207ENST00000580002 ZNF704Q6ZNC4 412 aaPredicted RBP21.72■■□□□ 1.07
SHMT1-207ENST00000580002 COLCA1Q6ZS62 124 aa21.72■■□□□ 1.07
SHMT1-207ENST00000580002 STEAP2Q8NFT2 490 aa21.72■■□□□ 1.07
SHMT1-207ENST00000580002 DERL3Q96Q80 235 aa21.72■■□□□ 1.07
SHMT1-207ENST00000580002 AMDHD2Q9Y303 409 aa21.72■■□□□ 1.07
SHMT1-207ENST00000580002 STARD10Q9Y365 291 aa21.72■■□□□ 1.07
SHMT1-207ENST00000580002 ISG15P05161 165 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 THBDP07204 575 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 CALRP27797 417 aaKnown RBP21.71■■□□□ 1.07
SHMT1-207ENST00000580002 SERPINB10P48595 397 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 ASCL1P50553 236 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 PPA1Q15181 289 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 ZNF544Q6NX49 715 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 GDPGP1Q6ZNW5 385 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 COMMD2Q86X83 199 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 GPR148Q8TDV2 347 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 KCNS3Q9BQ31 491 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 MOB1AQ9H8S9 216 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 IGLV1-44P01699 117 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 IGLV3-1P01715 115 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 ACHEP22303 614 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 SDC2P34741 201 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 RPS19P39019 145 aaKnown RBP21.71■■□□□ 1.07
SHMT1-207ENST00000580002 CAV3P56539 151 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 TRAM1Q15629 374 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 SLC25A35Q3KQZ1 300 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 Q499Y3 187 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 TMEM244Q5VVB8 128 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 CA5BP1Q8WTZ4 195 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 TSEN15Q8WW01 171 aaKnown RBP21.71■■□□□ 1.07
SHMT1-207ENST00000580002 DCSTAMPQ9H295 470 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 OBP2BQ9NPH6 170 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 CRNNQ9UBG3 495 aaPredicted RBP21.71■■□□□ 1.07
SHMT1-207ENST00000580002 HHLA2Q9UM44 414 aa21.71■■□□□ 1.07
SHMT1-207ENST00000580002 SYT7O43581 403 aa21.7■■□□□ 1.06
SHMT1-207ENST00000580002 CDRT1O95170 752 aa21.7■■□□□ 1.06
SHMT1-207ENST00000580002 APOC1P02654 83 aa21.7■■□□□ 1.06
SHMT1-207ENST00000580002 UBCP0CG48 685 aaKnown RBP21.7■■□□□ 1.06
SHMT1-207ENST00000580002 CALCRP30988 508 aa21.7■■□□□ 1.06
SHMT1-207ENST00000580002 ZNF92Q03936 586 aa21.7■■□□□ 1.06
SHMT1-207ENST00000580002 WFIKKN1Q96NZ8 548 aa21.7■■□□□ 1.06
SHMT1-207ENST00000580002 M0R1B8 84 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 NCR1O76036 304 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 UCHL1P09936 223 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 FAM157BP0CG42 384 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 DMRTC1Q5HYR2 192 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 RFPL4BQ6ZWI9 263 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 OR13C3Q8NGS6 347 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 TMEM106AQ96A25 262 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 MUCL1Q96DR8 90 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 KCTD7Q96MP8 289 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 OR10A2Q9H208 303 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 TPK1Q9H3S4 243 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 CADP27708 2225 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 TRAV8-7A0A075B6U6 113 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 TRBV5-7A0A0A0MS05 114 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 SLC22A1O15245 554 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 SERPINA3P01011 423 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 ERVS71-1P61550 626 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 TNK1Q13470 666 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 HLXQ14774 488 aaPredicted RBP21.69■■□□□ 1.06
SHMT1-207ENST00000580002 TBC1D28Q2M2D7 210 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 NR2C2APQ86WQ0 139 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 OR1J2Q8NGS2 313 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 FGGYQ96C11 551 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 ADAT3Q96EY9 351 aaPredicted RBP21.69■■□□□ 1.06
SHMT1-207ENST00000580002 REEP6Q96HR9 211 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 BCL7BQ9BQE9 202 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 DHDHQ9UQ10 334 aa21.69■■□□□ 1.06
SHMT1-207ENST00000580002 A0A0U1RQV5 110 aa21.68■■□□□ 1.06
SHMT1-207ENST00000580002 GALP22466 123 aa21.68■■□□□ 1.06
SHMT1-207ENST00000580002 SPATA46Q5T0L3 261 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms