RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 MRPL21Q7Z2W9 205 aaKnown RBP13.41□□□□□ -0.26
CLN3-229ENST00000567963 CYB561A3Q8NBI2 242 aa13.41□□□□□ -0.26
CLN3-229ENST00000567963 OR52L1Q8NGH7 329 aa13.41□□□□□ -0.26
CLN3-229ENST00000567963 OR11L1Q8NGX0 322 aa13.41□□□□□ -0.26
CLN3-229ENST00000567963 ZNRF4Q8WWF5 429 aa13.41□□□□□ -0.26
CLN3-229ENST00000567963 SPTSSAQ969W0 71 aa13.41□□□□□ -0.26
CLN3-229ENST00000567963 NUDT16L1Q9BRJ7 211 aaKnown RBP13.41□□□□□ -0.26
CLN3-229ENST00000567963 BTBD10Q9BSF8 475 aa13.41□□□□□ -0.26
CLN3-229ENST00000567963 SLC22A4Q9H015 551 aa13.41□□□□□ -0.26
CLN3-229ENST00000567963 UFSP2Q9NUQ7 469 aa13.41□□□□□ -0.26
CLN3-229ENST00000567963 IL20Q9NYY1 176 aa13.41□□□□□ -0.26
CLN3-229ENST00000567963 TAGLN3Q9UI15 199 aa13.41□□□□□ -0.26
CLN3-229ENST00000567963 LYVE1Q9Y5Y7 322 aa13.41□□□□□ -0.26
CLN3-229ENST00000567963 CDH10Q9Y6N8 788 aa13.41□□□□□ -0.26
CLN3-229ENST00000567963 PKD1L1Q8TDX9 2849 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 TRAV40A0A0B4J280 105 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 CD300LBA8K4G0 201 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 PHYHO14832 338 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 TMPRSS2O15393 492 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 GMDSO60547 372 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 PSMB10P40306 273 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 ZNF92Q03936 586 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 OR8G1Q15617 311 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 SPATS1Q496A3 300 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 WDR25Q64LD2 544 aaPredicted RBP13.4□□□□□ -0.26
CLN3-229ENST00000567963 SHISA2Q6UWI4 295 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 FITM2Q8N6M3 262 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 C19orf18Q8NEA5 215 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 PROKR2Q8NFJ6 384 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 OR9Q2Q8NGE9 314 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 OR2T4Q8NH00 348 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 ARL8BQ9NVJ2 186 aa13.4□□□□□ -0.26
CLN3-229ENST00000567963 NOP16Q9Y3C1 178 aaKnown RBP13.4□□□□□ -0.26
CLN3-229ENST00000567963 TVP23AA6NH52 213 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 PTBP3O95758 552 aaKnown RBP13.39□□□□□ -0.27
CLN3-229ENST00000567963 GASTP01350 101 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 PSKH1P11801 424 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 ANOS1P23352 680 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 HOXA4Q00056 320 aaPredicted RBP13.39□□□□□ -0.27
CLN3-229ENST00000567963 LYPD4Q6UWN0 246 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 C16orf89Q6UX73 402 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 DEFB107AQ8IZN7 70 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 LINC00471Q8N535 108 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 PLPP7Q8NBV4 271 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 OR2AE1Q8NHA4 323 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 TRIM15Q9C019 465 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 FN3KRPQ9HA64 309 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 RNF7Q9UBF6 113 aa13.39□□□□□ -0.27
CLN3-229ENST00000567963 TNFRSF11BO00300 401 aa13.38□□□□□ -0.27
CLN3-229ENST00000567963 NPY4RP50391 375 aa13.38□□□□□ -0.27
CLN3-229ENST00000567963 PRR31Q5SQ13 230 aa13.38□□□□□ -0.27
CLN3-229ENST00000567963 GLYATL3Q5SZD4 288 aa13.38□□□□□ -0.27
CLN3-229ENST00000567963 SFRP4Q6FHJ7 346 aaPredicted RBP13.38□□□□□ -0.27
CLN3-229ENST00000567963 ZNF770Q6IQ21 691 aaPredicted RBP13.38□□□□□ -0.27
CLN3-229ENST00000567963 DRAM2Q6UX65 266 aa13.38□□□□□ -0.27
CLN3-229ENST00000567963 RASSF6Q6ZTQ3 369 aa13.38□□□□□ -0.27
CLN3-229ENST00000567963 DCXRQ7Z4W1 244 aa13.38□□□□□ -0.27
CLN3-229ENST00000567963 SLC37A3Q8NCC5 494 aa13.38□□□□□ -0.27
CLN3-229ENST00000567963 OR51L1Q8NGJ5 315 aa13.38□□□□□ -0.27
CLN3-229ENST00000567963 OR8D4Q8NGM9 314 aa13.38□□□□□ -0.27
CLN3-229ENST00000567963 ADAT1Q9BUB4 502 aaKnown RBP13.38□□□□□ -0.27
CLN3-229ENST00000567963 NDE1Q9NXR1 346 aa13.38□□□□□ -0.27
CLN3-229ENST00000567963 MRPL15Q9P015 296 aaKnown RBP13.38□□□□□ -0.27
CLN3-229ENST00000567963 COMMD3-BMI1R4GMX3 469 aa13.38□□□□□ -0.27
CLN3-229ENST00000567963 C5orf63A6NC05 138 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 GGT3PA6NGU5 568 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 C22orf46C9J442 243 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 MAGEA2P43356 314 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 FGF12P61328 243 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 IL13RA1P78552 427 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 KCNJ8Q15842 424 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 PCK2Q16822 640 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 CYP2R1Q6VVX0 501 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 LNX2Q8N448 690 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 OR4C15Q8NGM1 316 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 OR9Q1Q8NGQ5 310 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 COPS4Q9BT78 406 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 PRDM13Q9H4Q3 707 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 ZNF696Q9H7X3 374 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 UNKLQ9H9P5 680 aaKnown RBP13.37□□□□□ -0.27
CLN3-229ENST00000567963 ACTR3BQ9P1U1 418 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 MGAM2Q2M2H8 2515 aa13.37□□□□□ -0.27
CLN3-229ENST00000567963 MDFIC2A0A1B0GVS7 189 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 ZNF593O00488 134 aaPredicted RBP13.36□□□□□ -0.27
CLN3-229ENST00000567963 TNFRSF13BO14836 293 aaPredicted RBP13.36□□□□□ -0.27
CLN3-229ENST00000567963 ENSAO43768 121 aaKnown RBP13.36□□□□□ -0.27
CLN3-229ENST00000567963 FMO3P31513 532 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 ENTPD1P49961 510 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 BPIFB3P59826 476 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 MXRA7P84157 204 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 C16orf87Q6PH81 154 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 BRD3OSQ6XYD6 125 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 PIGWQ7Z7B1 504 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 ZNF511Q8NB15 262 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 TAF15Q92804 592 aaKnown RBP eCLIP13.36□□□□□ -0.27
CLN3-229ENST00000567963 SLAMF6Q96DU3 332 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 KCNJ15Q99712 375 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 TSSK6Q9BXA6 273 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 MMADHCQ9H3L0 296 aaPredicted RBP13.36□□□□□ -0.27
CLN3-229ENST00000567963 TBC1D23Q9NUY8 699 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms