RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 FKBP9P1Q75LS8 142 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 PGAP1Q75T13 922 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 CYP4Z1Q86W10 505 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 PNLDC1Q8NA58 520 aaKnown RBP13.58□□□□□ -0.24
CLN3-208ENST00000561505 ZSCAN4Q8NAM6 433 aaPredicted RBP13.58□□□□□ -0.24
CLN3-208ENST00000561505 GATAD2BQ8WXI9 593 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 SLCO4A1Q96BD0 722 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 RCN3Q96D15 328 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 ATF6BQ99941 703 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 PCGF1Q9BSM1 259 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 TRIM15Q9C019 465 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 FN3KRPQ9HA64 309 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 KCNG2Q9UJ96 466 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 RNF114Q9Y508 228 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 CAPN7Q9Y6W3 813 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 TRBV4-1A0A0J9YWV2 114 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 UNC119BA6NIH7 251 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 CD300LBA8K4G0 201 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 GPR137BO60478 399 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 ECDO95905 644 aaPredicted RBP13.57□□□□□ -0.24
CLN3-208ENST00000561505 TROVE2P10155 538 aaKnown RBP eCLIP13.57□□□□□ -0.24
CLN3-208ENST00000561505 HOXA4Q00056 320 aaPredicted RBP13.57□□□□□ -0.24
CLN3-208ENST00000561505 MALLQ13021 153 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 TAF9Q16594 264 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 TEX36Q5VZQ5 186 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 METAP1DQ6UB28 335 aaPredicted RBP13.57□□□□□ -0.24
CLN3-208ENST00000561505 HACD2Q6Y1H2 254 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 GCSAMQ8N6F7 178 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 C19orf18Q8NEA5 215 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 MAP6Q96JE9 813 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 CCT8L2Q96SF2 557 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 DDOQ99489 341 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 MRPL22Q9NWU5 206 aaKnown RBP13.57□□□□□ -0.24
CLN3-208ENST00000561505 KIF17Q9P2E2 1029 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 POLR1DQ9Y2S0 133 aa13.57□□□□□ -0.24
CLN3-208ENST00000561505 TRAV38-1A0A0B4J264 116 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 F5H5K5 113 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 IDH3BO43837 385 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 IGHV4-59P01825 116 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 LCATP04180 440 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 CA6P23280 308 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 PRSS12P56730 875 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 SPERTQ8NA61 448 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 LY6G5BQ8NDX9 201 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 ERMAPQ96PL5 475 aaPredicted RBP13.56□□□□□ -0.24
CLN3-208ENST00000561505 NMNAT3Q96T66 252 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 PITX2Q99697 317 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 SRA1Q9HD15 236 aaKnown RBP13.56□□□□□ -0.24
CLN3-208ENST00000561505 UFSP2Q9NUQ7 469 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 MRPL15Q9P015 296 aaKnown RBP13.56□□□□□ -0.24
CLN3-208ENST00000561505 ABCD2Q9UBJ2 740 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 KPTNQ9Y664 436 aa13.56□□□□□ -0.24
CLN3-208ENST00000561505 OR6C68A6NDL8 312 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 OOEPA6NGQ2 149 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 SLC22A31A6NKX4 558 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 ADAM20O43506 726 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 TSPAN9O75954 239 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 HIST1H1CP16403 213 aaKnown RBP13.55□□□□□ -0.24
CLN3-208ENST00000561505 ANOS1P23352 680 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 SLC7A2P52569 658 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 TPTEP56180 551 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 ZNF92Q03936 586 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 OR8G1Q15617 311 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 Q6ZSV7 163 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 HDXQ7Z353 690 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 FAM90A1Q86YD7 464 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 LINC00346Q8IVM7 164 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 PIP4P2Q8N4L2 257 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 SPRYD4Q8WW59 207 aaPredicted RBP13.55□□□□□ -0.24
CLN3-208ENST00000561505 TECTBQ96PL2 329 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 OR52D1Q9H346 318 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 TNFRSF19Q9NS68 423 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 DCAF13Q9NV06 445 aaKnown RBP13.55□□□□□ -0.24
CLN3-208ENST00000561505 FGFR1OP2Q9NVK5 253 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 AURKCQ9UQB9 309 aa13.55□□□□□ -0.24
CLN3-208ENST00000561505 A0A0U1RQK1 487 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 M0R135 149 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 NDUFAB1O14561 156 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 RENP00797 406 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 SEMG1P04279 462 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 COX4I1P13073 169 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 SLC6A6P31641 620 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 DBPQ10586 325 aaPredicted RBP13.54□□□□□ -0.24
CLN3-208ENST00000561505 PCK2Q16822 640 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 SNAI3Q3KNW1 292 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 METTL11BQ5VVY1 283 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 SFRP4Q6FHJ7 346 aaPredicted RBP13.54□□□□□ -0.24
CLN3-208ENST00000561505 GDPGP1Q6ZNW5 385 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 C11orf53Q8IXP5 236 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 NPRL2Q8WTW4 380 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 SPSB4Q96A44 273 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 ZNF799Q96GE5 643 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 CNTD2Q9H8S5 307 aa13.54□□□□□ -0.24
CLN3-208ENST00000561505 RPUSD1Q9UJJ7 312 aaKnown RBP13.54□□□□□ -0.24
CLN3-208ENST00000561505 FAM32AQ9Y421 112 aaKnown RBP13.54□□□□□ -0.24
CLN3-208ENST00000561505 C5orf63A6NC05 138 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 DVL1O14640 695 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 GSTA4O15217 222 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 NOS3P29474 1203 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 GSSP48637 474 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms