RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 BCL2L14Q9BZR8 327 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 RALYQ9UKM9 306 aaKnown RBP8.27□□□□□ -1.09
LIMA1-211ENST00000552338 SLC22A13Q9Y226 551 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 ZNF281Q9Y2X9 895 aa8.27□□□□□ -1.09
LIMA1-211ENST00000552338 PLCE1Q9P212 2302 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 A0A1B0GWJ7 208 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 TRDV1A0A1B0GX56 115 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 DEFB108AA8MXU0 73 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 SMPD2O60906 423 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 GPX5O75715 221 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 GATBO75879 557 aaKnown RBP8.26□□□□□ -1.09
LIMA1-211ENST00000552338 ALX3O95076 343 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 CRYAAP02489 173 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 RAF1P04049 648 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 RNF224P0DH78 156 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 CD37P11049 281 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 CELP19835 753 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 ACHEP22303 614 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 DDOSTP39656 456 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 RAD52P43351 418 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 GALK2Q01415 458 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 OR8B8Q15620 311 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 NEDD8Q15843 81 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 BEX5Q5H9J7 111 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 ZBTB37Q5TC79 503 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 MBNL2Q5VZF2 373 aaKnown RBP8.26□□□□□ -1.09
LIMA1-211ENST00000552338 ZNF101Q8IZC7 436 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 PAQR4Q8N4S7 273 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-211ENST00000552338 OR5L1Q8NGL2 311 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 OR5AK2Q8NH90 309 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 GHSRQ92847 366 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 SGK3Q96BR1 496 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 MARS2Q96GW9 593 aaKnown RBP8.26□□□□□ -1.09
LIMA1-211ENST00000552338 MED18Q9BUE0 208 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 TTTY10Q9BZA0 68 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 COMMD4Q9H0A8 199 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 OR10A2Q9H208 303 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 ESRP2Q9H6T0 727 aaKnown RBP8.26□□□□□ -1.09
LIMA1-211ENST00000552338 ZNF442Q9H7R0 627 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 CDH20Q9HBT6 801 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 NDUFA13Q9P0J0 144 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 EIF3KQ9UBQ5 218 aaKnown RBP8.26□□□□□ -1.09
LIMA1-211ENST00000552338 GRIP1Q9Y3R0 1128 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 V9GYS6 101 aa8.26□□□□□ -1.09
LIMA1-211ENST00000552338 ANKHD1Q8IWZ3 2542 aaKnown RBP8.25□□□□□ -1.09
LIMA1-211ENST00000552338 IGLV3-9A0A075B6K5 115 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 hCG_38984A0A1B0GV85 526 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 TRIM64BA6NI03 449 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 C19orf84I3L1E1 186 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 ZNF701M0R085 212 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-211ENST00000552338 SIAH2O43255 324 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 DHRS3O75911 302 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 RPP14O95059 124 aaKnown RBP8.25□□□□□ -1.09
LIMA1-211ENST00000552338 SERPINA3P01011 423 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 NGFP01138 241 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 LCATP04180 440 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 HLA-DPB1P04440 258 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 RAC2P15153 192 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 ZNF250P15622 560 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 ANOS1P23352 680 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 PSMB9P28065 219 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 PSMB10P40306 273 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 CRYBB2P43320 205 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 EVX1P49640 407 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 ZNF83P51522 516 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 TNK1Q13470 666 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 TSTQ16762 297 aaKnown RBP8.25□□□□□ -1.09
LIMA1-211ENST00000552338 SNAI3Q3KNW1 292 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 SPATC1Q76KD6 591 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 DOK3Q7L591 496 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 PARP16Q8N5Y8 322 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 OR14K1Q8NGZ2 314 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 LINC01560Q8TB33 94 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 RGP1Q92546 391 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-211ENST00000552338 AKAP1Q92667 903 aaKnown RBP eCLIP8.25□□□□□ -1.09
LIMA1-211ENST00000552338 PPP1R14AQ96A00 147 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 TMIGD2Q96BF3 282 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 HAVCR1Q96D42 359 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 LYZL4Q96KX0 146 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 RBM38Q9H0Z9 239 aaKnown RBP8.25□□□□□ -1.09
LIMA1-211ENST00000552338 BATF3Q9NR55 127 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 KCNN3Q9UGI6 736 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 HHLA2Q9UM44 414 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 STARD10Q9Y365 291 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 SPEF1Q9Y4P9 236 aa8.25□□□□□ -1.09
LIMA1-211ENST00000552338 TRBV5-7A0A0A0MS05 114 aa8.24□□□□□ -1.09
LIMA1-211ENST00000552338 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-211ENST00000552338 A6NHS1 94 aa8.24□□□□□ -1.09
LIMA1-211ENST00000552338 SHISA9B4DS77 424 aa8.24□□□□□ -1.09
LIMA1-211ENST00000552338 M0R1B8 84 aa8.24□□□□□ -1.09
LIMA1-211ENST00000552338 MTRF1O75570 445 aaKnown RBP8.24□□□□□ -1.09
LIMA1-211ENST00000552338 ANXA2P07355 339 aaKnown RBP8.24□□□□□ -1.09
LIMA1-211ENST00000552338 HSMCR30P0CW71 290 aa8.24□□□□□ -1.09
LIMA1-211ENST00000552338 CCL2P13500 99 aa8.24□□□□□ -1.09
LIMA1-211ENST00000552338 CD36P16671 472 aa8.24□□□□□ -1.09
LIMA1-211ENST00000552338 KITLGP21583 273 aa8.24□□□□□ -1.09
LIMA1-211ENST00000552338 KIR2DL3P43628 341 aa8.24□□□□□ -1.09
LIMA1-211ENST00000552338 SLC6A9P48067 706 aa8.24□□□□□ -1.09
LIMA1-211ENST00000552338 TMBIM6P55061 237 aa8.24□□□□□ -1.09
LIMA1-211ENST00000552338 PPP1CBP62140 327 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms