RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 ROM1Q03395 351 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 INPP5JQ15735 1006 aaPredicted RBP11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 COX15Q7KZN9 410 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 GALNTL5Q7Z4T8 443 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 DAZLQ92904 295 aaKnown RBP11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 RSRP1Q9BUV0 290 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 IFT22Q9H7X7 185 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 COL6A3P12111 3177 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 A8MVM7 634 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 MS4A18H0YCH9 400 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 P2RY10O00398 339 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 EIF3GO75821 320 aaKnown RBP eCLIP11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 ZNF432O94892 652 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 MT-ATP6P00846 226 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 ZNF735P0CB33 412 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 CFPP27918 469 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 ADH6P28332 368 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 ARL4DP49703 201 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 NPY4RP50391 375 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 AIMP2Q13155 320 aaKnown RBP11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 MS4A18Q3C1V0 323 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 RNASE10Q5GAN6 216 aaKnown RBP11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 PAPD4Q6PIY7 484 aaKnown RBP11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 ACOT7LQ6ZUV0 252 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 SVBPQ8N300 66 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 EIF4E3Q8N5X7 224 aaKnown RBP11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 OR5AP2Q8NGF4 316 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 OR4A4PQ8NGN8 299 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 ISOC2Q96AB3 205 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 ZNF501Q96CX3 271 aaPredicted RBP11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 SPSB2Q99619 263 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 NUDT22Q9BRQ3 303 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 SMIM3Q9BZL3 60 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 WDFY4Q6ZS81 3184 aa11.19□□□□□ -0.62
SFSWAP-208ENST00000539506 SHISA8B8ZZ34 492 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 SLC17A2O00624 439 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 RCC1P18754 421 aaPredicted RBP11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 BCKDHBP21953 392 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 NME2P22392 152 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 FBXW4P57775 412 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 GFOD2Q3B7J2 385 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 PTCRAQ6ISU1 281 aaPredicted RBP11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 CATSPERDQ86XM0 798 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 OR13C3Q8NGS6 347 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 MRGPRFQ96AM1 343 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 PTGES2Q9H7Z7 377 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 HTR3BO95264 441 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 AGTR1P30556 359 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 SLC18B1Q6NT16 456 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 RAB11FIP2Q7L804 512 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 GRINAQ7Z429 371 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 COA4Q9NYJ1 87 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 COPS7AQ9UBW8 275 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 A0A1B0GW55 424 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 A0A1B0GX78 115 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 C9orf170A2RU37 121 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 PHYHO14832 338 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 MBTPS2O43462 519 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 SGCEO43556 437 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 STK17BO94768 372 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 DUX4L2P0CJ85 424 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 DUX4L3P0CJ86 424 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 DUX4L4P0CJ87 422 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 DUX4L5P0CJ88 424 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 DUX4L6P0CJ89 424 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 DUX4L7P0CJ90 424 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 IGFBP4P22692 258 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 PTGFRP43088 359 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 MEOX2P50222 304 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 RNF4P78317 190 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 ZNF528Q3MIS6 628 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 APCDD1LQ8NCL9 501 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 OR51F2Q8NH61 342 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 NICN1Q9BSH3 213 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 FGF21Q9NSA1 209 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 UPB1Q9UBR1 384 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 DUX4Q9UBX2 424 aa11.18□□□□□ -0.62
SFSWAP-208ENST00000539506 A0A1W2PP11 408 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 H0YIZ8 118 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 ZNF205O95201 554 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 SLC2A1P11166 492 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 IGFBP3P17936 291 aaPredicted RBP11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 ACTBP60709 375 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 S100A10P60903 97 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 ACTG1P63261 375 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 ZNF585AQ6P3V2 769 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 FOXRED1Q96CU9 486 aaPredicted RBP11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 PIGMQ9H3S5 423 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 CHMP1AQ9HD42 196 aaPredicted RBP11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 SLC5A6Q9Y289 635 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 MEX3AA1L020 520 aaKnown RBP11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 C9JQL5 133 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 SDCBPO00560 298 aaPredicted RBP11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 NUDT21O43809 227 aaKnown RBP11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 TIAF1O95411 115 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 IGHMP01871 453 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 GLI4P10075 376 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 RSPO4Q2I0M5 234 aaPredicted RBP11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 SPAG16Q8N0X2 631 aa11.17□□□□□ -0.62
SFSWAP-208ENST00000539506 SEMA6DQ8NFY4 1073 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms