RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 PLEKHG7Q6ZR37 379 aa5.4□□□□□ -1.54
LSM1-202ENST00000520286 PGAM4Q8N0Y7 254 aa5.4□□□□□ -1.54
LSM1-202ENST00000520286 BBS1Q8NFJ9 593 aa5.4□□□□□ -1.54
LSM1-202ENST00000520286 PDCD6IPQ8WUM4 868 aaKnown RBP5.4□□□□□ -1.54
LSM1-202ENST00000520286 S100ZQ8WXG8 99 aa5.4□□□□□ -1.54
LSM1-202ENST00000520286 KLF6Q99612 283 aaPredicted RBP5.4□□□□□ -1.54
LSM1-202ENST00000520286 SLC29A1Q99808 456 aa5.4□□□□□ -1.54
LSM1-202ENST00000520286 BCL7BQ9BQE9 202 aa5.4□□□□□ -1.54
LSM1-202ENST00000520286 FRMD8P1Q9BZ68 369 aaPredicted RBP5.4□□□□□ -1.54
LSM1-202ENST00000520286 SHCBP1LQ9BZQ2 653 aa5.4□□□□□ -1.54
LSM1-202ENST00000520286 POLR2J2Q9GZM3 115 aaKnown RBP5.4□□□□□ -1.54
LSM1-202ENST00000520286 POLR2J3Q9H1A7 115 aaKnown RBP5.4□□□□□ -1.54
LSM1-202ENST00000520286 ADAP2Q9NPF8 381 aa5.4□□□□□ -1.54
LSM1-202ENST00000520286 XPNPEP1Q9NQW7 623 aa5.4□□□□□ -1.54
LSM1-202ENST00000520286 ENPP5Q9UJA9 477 aa5.4□□□□□ -1.54
LSM1-202ENST00000520286 PSME2Q9UL46 239 aa5.4□□□□□ -1.54
LSM1-202ENST00000520286 ASF1AQ9Y294 204 aa5.4□□□□□ -1.54
LSM1-202ENST00000520286 RBMX2Q9Y388 322 aaKnown RBP5.4□□□□□ -1.54
LSM1-202ENST00000520286 SIPA1L1O43166 1804 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 LTBP2Q14767 1821 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 TCRBV3S1A0A5B6 114 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 RBMY1BA6NDE4 496 aaKnown RBP5.39□□□□□ -1.55
LSM1-202ENST00000520286 RBMY1EA6NEQ0 496 aaKnown RBP5.39□□□□□ -1.55
LSM1-202ENST00000520286 SYCE1LA8MT33 242 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 TRIM49D1C9J1S8 452 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 PSMD11O00231 422 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 HAT1O14929 419 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 SOX15O60248 233 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 BANF1O75531 89 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 IGHV2-5P01817 119 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 SNRPAP09012 282 aaKnown RBP5.39□□□□□ -1.55
LSM1-202ENST00000520286 RBMY1DP0C7P1 496 aaKnown RBP5.39□□□□□ -1.55
LSM1-202ENST00000520286 RBMY1A1P0DJD3 496 aaKnown RBP5.39□□□□□ -1.55
LSM1-202ENST00000520286 OR8G3PP0DMU2 310 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 CTRB1P17538 263 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 RIPPLY3P57055 190 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 GNG2P59768 71 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 IFITM3Q01628 133 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 GNA12Q03113 381 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 CTRB2Q6GPI1 263 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 MFSD6LQ8IWD5 586 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 C12orf56Q8IXR9 622 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 MS4A15Q8N5U1 240 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 SNX31Q8N9S9 440 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 FBXO36Q8NEA4 188 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 OR2G2Q8NGZ5 317 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 ACER1Q8TDN7 264 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 RAB2BQ8WUD1 216 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 SMARCD2Q92925 531 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 PEX13Q92968 403 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 GLT1D1Q96MS3 346 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 RILPQ96NA2 401 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 PELOQ9BRX2 385 aaKnown RBP5.39□□□□□ -1.55
LSM1-202ENST00000520286 NAA50Q9GZZ1 169 aaKnown RBP5.39□□□□□ -1.55
LSM1-202ENST00000520286 SH2D2AQ9NP31 389 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 HMG20AQ9NP66 347 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 C8orf4Q9NR00 106 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 FBXO8Q9NRD0 319 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 SLC7A10Q9NS82 523 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 AIG1Q9NVV5 245 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 IL20Q9NYY1 176 aa5.39□□□□□ -1.55
LSM1-202ENST00000520286 ISPDA4D126 451 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 EVPLLA8MZ36 301 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 CASC3O15234 703 aaKnown RBP5.38□□□□□ -1.55
LSM1-202ENST00000520286 SNAI1O95863 264 aaPredicted RBP5.38□□□□□ -1.55
LSM1-202ENST00000520286 SERPINE1P05121 402 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 RALBP11234 206 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 IL9P15248 144 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 ME2P23368 584 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 VDAC2P45880 294 aaPredicted RBP5.38□□□□□ -1.55
LSM1-202ENST00000520286 DSCR10P59022 87 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 BASP1P80723 227 aaKnown RBP5.38□□□□□ -1.55
LSM1-202ENST00000520286 ATP6AP1Q15904 470 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 UBE2SQ16763 222 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 EOGTQ5NDL2 527 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 GPR107Q5VW38 600 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 ANKRD22Q5VYY1 191 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 EPGNQ6UW88 154 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 ZNF836Q6ZNA1 936 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 AKAP14Q86UN6 197 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 PRR22Q8IZ63 422 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 ASCC1Q8N9N2 400 aaKnown RBP5.38□□□□□ -1.55
LSM1-202ENST00000520286 NKAPP1Q8N9T2 125 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 BPIFCQ8NFQ6 507 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 OR6C4Q8NGE1 309 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 PHOSPHO2Q8TCD6 241 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 ATP5SQ99766 215 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 SLC7A5P2Q9GIP4 190 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 RPS10P5Q9NQ39 176 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 AGPAT3Q9NRZ7 376 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 VSIG4Q9Y279 399 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 COQ4Q9Y3A0 265 aa5.38□□□□□ -1.55
LSM1-202ENST00000520286 CACNA1AO00555 2505 aa5.37□□□□□ -1.55
LSM1-202ENST00000520286 MYH9P35579 1960 aaKnown RBP5.37□□□□□ -1.55
LSM1-202ENST00000520286 CROCCQ5TZA2 2017 aa5.37□□□□□ -1.55
LSM1-202ENST00000520286 hCG_1818297A0A087WSY0 165 aa5.37□□□□□ -1.55
LSM1-202ENST00000520286 ZFP92A6NM28 416 aa5.37□□□□□ -1.55
LSM1-202ENST00000520286 H0YC42 278 aa5.37□□□□□ -1.55
LSM1-202ENST00000520286 TRDMT1O14717 391 aaKnown RBP5.37□□□□□ -1.55
LSM1-202ENST00000520286 RAB29O14966 203 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms