RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CELSR2Q9HCU4 2923 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 XRCC2O43543 280 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 CLPTM1O96005 669 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 MT-ND5P03915 603 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 HTR1AP08908 422 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 ANOS1P23352 680 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 C21orf33P30042 268 aaPredicted RBP12.85□□□□□ -0.35
NUP54-213ENST00000513352 DCTDP32321 178 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 GBX2P52951 348 aaPredicted RBP12.85□□□□□ -0.35
NUP54-213ENST00000513352 SLC35A2P78381 396 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 NKPD1Q17RQ9 610 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 ODF4Q2M2E3 257 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 PGAP1Q75T13 922 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 SYS1Q8N2H4 156 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 PIP4P2Q8N4L2 257 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 OR52H1Q8NGJ2 320 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 SPRYD4Q8WW59 207 aaPredicted RBP12.85□□□□□ -0.35
NUP54-213ENST00000513352 REEP6Q96HR9 211 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 SIGLEC11Q96RL6 698 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 LIME1Q9H400 295 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 MOB1AQ9H8S9 216 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 OR52A1Q9UKL2 312 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 ERGIC3Q9Y282 383 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 LRRC42Q9Y546 428 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 SNX5Q9Y5X3 404 aa12.85□□□□□ -0.35
NUP54-213ENST00000513352 GGT3PA6NGU5 568 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 H3BSA7 217 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 PNPP00491 289 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 MT-ND2P03891 347 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 SOD3P08294 240 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 ZNF250P15622 560 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 TUBG1P23258 451 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 MMP16P51512 607 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 SNRPD2P62316 118 aaKnown RBP12.84□□□□□ -0.35
NUP54-213ENST00000513352 ZNF92Q03936 586 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 MBNL2Q5VZF2 373 aaKnown RBP12.84□□□□□ -0.35
NUP54-213ENST00000513352 PRSS45Q7RTY3 260 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 OR5AS1Q8N127 324 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 RORBQ92753 470 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 PPP1R14AQ96A00 147 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 PELI1Q96FA3 418 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 TUBG2Q9NRH3 451 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 CBLN4Q9NTU7 201 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 TAAR3PQ9P1P4 343 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 MYEF2Q9P2K5 600 aaKnown RBP12.84□□□□□ -0.35
NUP54-213ENST00000513352 SLC22A13Q9Y226 551 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 PLEKHA6Q9Y2H5 1048 aa12.84□□□□□ -0.35
NUP54-213ENST00000513352 ACOD1A6NK06 481 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 B9A039 149 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 SRSF10O75494 262 aaKnown RBP12.83□□□□□ -0.36
NUP54-213ENST00000513352 RAC2P15153 192 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 ALDH3B1P43353 468 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 PSG7Q13046 419 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 GK2Q14410 553 aaPredicted RBP12.83□□□□□ -0.36
NUP54-213ENST00000513352 OR2T2Q6IF00 324 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 PAMR1Q6UXH9 720 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 FBXW12Q6X9E4 464 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 CATSPERDQ86XM0 798 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 KLBQ86Z14 1044 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 BHLHE23Q8NDY6 225 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 OR52N1Q8NH53 320 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 OR51E1Q8TCB6 317 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 GATAD2BQ8WXI9 593 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 FAM71F1Q96KD3 344 aaPredicted RBP12.83□□□□□ -0.36
NUP54-213ENST00000513352 ZNF649Q9BS31 505 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 TRAF4Q9BUZ4 470 aaPredicted RBP12.83□□□□□ -0.36
NUP54-213ENST00000513352 MND1Q9BWT6 205 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 YTHDF1Q9BYJ9 559 aaKnown RBP12.83□□□□□ -0.36
NUP54-213ENST00000513352 DUSP21Q9H596 190 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 OPA3Q9H6K4 179 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 ZNF319Q9P2F9 582 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 NUFIP1Q9UHK0 495 aaKnown RBP12.83□□□□□ -0.36
NUP54-213ENST00000513352 GPR160Q9UJ42 338 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 PURGQ9UJV8 347 aaKnown RBP12.83□□□□□ -0.36
NUP54-213ENST00000513352 EDARQ9UNE0 448 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 LRCH1Q9Y2L9 728 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 LRBAP50851 2863 aa12.83□□□□□ -0.36
NUP54-213ENST00000513352 ABCA12Q86UK0 2595 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 TMEM129A0AVI4 362 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 PLSCR5A0PG75 271 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 H3BSH0 61 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 M0R233 179 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 TTRP02766 147 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 RAF1P04049 648 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 DANCRP0C864 163 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 BMP4P12644 408 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 SELEP16581 610 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 CFL1P23528 166 aaKnown RBP12.82□□□□□ -0.36
NUP54-213ENST00000513352 GABARAPL2P60520 117 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 MRPL28Q13084 256 aaKnown RBP12.82□□□□□ -0.36
NUP54-213ENST00000513352 ALKBH1Q13686 389 aaKnown RBP12.82□□□□□ -0.36
NUP54-213ENST00000513352 EFNB3Q15768 340 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 MOGQ16653 247 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 WDR38Q5JTN6 314 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 DTX2Q86UW9 622 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 OR2G2Q8NGZ5 317 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 SGK3Q96BR1 496 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 HAVCR1Q96D42 359 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 LURAP1Q96LR2 239 aa12.82□□□□□ -0.36
NUP54-213ENST00000513352 CACNG6Q9BXT2 260 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms