RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 OR6C76A6NM76 312 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 H3BUI4 141 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 PHF1O43189 567 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 NME2P1O60361 137 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 TK1P04183 234 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 CT45A8P0DMV1 189 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 CT45A9P0DMV2 189 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 DCDP81605 110 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 CT45A2Q5DJT8 189 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ADAM5Q6NVV9 412 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 LILRB2Q8N423 598 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 OR6C1Q96RD1 312 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 CTSFQ9UBX1 484 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 KLF15Q9UIH9 416 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 PADI1Q9ULC6 663 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 FLVCR1Q9Y5Y0 555 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ZSWIM8A7E2V4 1837 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 PIGBOS1A0A0B4J2F0 54 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 LOC102725191A0A1B0GVB3 256 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 A0A1W2PPC4 97 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 G3V3Y1 287 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ITGB2P05107 769 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 GABRG2P18507 467 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 EIF1P41567 113 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF133P52736 654 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 UBE2KP61086 200 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 RPS18P62269 152 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 PCK2Q16822 640 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 NR2C2APQ86WQ0 139 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 PPP1R3BQ86XI6 285 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 STT3BQ8TCJ2 826 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 TM4SF19Q96DZ7 209 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 SEH1LQ96EE3 360 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 PHYHIPLQ96FC7 376 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 RHOFQ9HBH0 211 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 NECAP2Q9NVZ3 263 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF175Q9Y473 711 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 K7EQS6 105 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 BET1O15155 118 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF354AO60765 605 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ZIC2O95409 532 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF44P15621 663 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ABOP16442 354 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 NAT1P18440 290 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ABCD3P28288 659 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 SRYQ05066 204 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 DCAF12L2Q5VW00 463 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 ARRDC1Q8N5I2 433 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 OR51A2Q8NGJ7 313 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 OR14K1Q8NGZ2 314 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 MARVELD3Q96A59 401 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 OR5B12Q96R08 314 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 CNTD2Q9H8S5 307 aa7.55□□□□□ -1.2
LIMCH1-216ENST00000512820 A0A0G2JK05 382 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 NGFRP08138 427 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 OR13C7P0DN81 318 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 RAB5CP51148 216 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF121P58317 390 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 MRPL21Q7Z2W9 205 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 LGI3Q8N145 548 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 SLC30A7Q8NEW0 376 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 OR52N4Q8NGI2 321 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 NINJ1Q92982 152 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 SGCZQ96LD1 299 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 AICDAQ9GZX7 198 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 GPR160Q9UJ42 338 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 PCOLCE2Q9UKZ9 415 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 PLSCR5A0PG75 271 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 OR6C65A6NJZ3 312 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 ATG12O94817 140 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 OTX2P32243 289 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 LBX1P52954 281 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 FOXF1Q12946 379 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 NKAIN1Q4KMZ8 207 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 FIP1L1Q6UN15 594 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 SPRED2Q7Z698 418 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 OR4D6Q8NGJ1 314 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 GPX8Q8TED1 209 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 SECTM1Q8WVN6 248 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 ATOH1Q92858 354 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 GPR173Q9NS66 373 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 ALG1L2C9J202 215 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 PRSS44E7EML9 344 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 TRIM77I1YAP6 450 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 LRP3O75074 770 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 MSR1P21757 451 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 RPS4Y1P22090 263 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 CDAP32320 146 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 ALDH3B1P43353 468 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 GPR3P46089 330 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 RPL23AP62750 156 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 CEBPEQ15744 281 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 SLC16A14Q7RTX9 510 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 ARHGEF39Q8N4T4 335 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 SUMF1Q8NBK3 374 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 OR5L1Q8NGL2 311 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 OR13C8Q8NGS7 320 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 GABRG3Q99928 467 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 SPACA1Q9HBV2 294 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 NIT2Q9NQR4 276 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms