RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 GFRA1P56159 465 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 ACTBP60709 375 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 ACTG1P63261 375 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 CD83Q01151 205 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 ODF4Q2M2E3 257 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 KRTAP27-1Q3LI81 207 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 NRN1LQ496H8 165 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 CCDC92Q53HC0 331 aaPredicted RBP9.47□□□□□ -0.89
USP4-214ENST00000491791 TMEM255AQ5JRV8 349 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 METTL11BQ5VVY1 283 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 SLC25A25Q6KCM7 469 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 DOK3Q7L591 496 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 OR2W3Q7Z3T1 314 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 TMEM229BQ8NBD8 167 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 OR51A2Q8NGJ7 313 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 OR1J2Q8NGS2 313 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 CPT1CQ8TCG5 803 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 AQP3Q92482 292 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 ITFG2Q969R8 447 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 TMEM45BQ96B21 275 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 FGGYQ96C11 551 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 ZNF385AQ96PM9 386 aaKnown RBP9.47□□□□□ -0.89
USP4-214ENST00000491791 ALX4Q9H161 411 aaPredicted RBP9.47□□□□□ -0.89
USP4-214ENST00000491791 C20orf85Q9H1P6 137 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 PRORYQ9H606 182 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 SEC61A2Q9H9S3 476 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 NPDC1Q9NQX5 325 aaPredicted RBP9.47□□□□□ -0.89
USP4-214ENST00000491791 STMN3Q9NZ72 180 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 ASH2LQ9UBL3 628 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 GTF2A1LQ9UNN4 478 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 KIF26BQ2KJY2 2108 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 PTPRQQ9UMZ3 2332 aa9.47□□□□□ -0.89
USP4-214ENST00000491791 EML6Q6ZMW3 1958 aa9.46□□□□□ -0.89
USP4-214ENST00000491791 TRAV6A0A075B6T7 132 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 IGKV3D-15A0A087WSY6 115 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 LOC101059948A0A1B0GTJ6 334 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 METTL21EPA6NDL7 271 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 TMEM14DPA8MWL7 114 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 OPN1LWP04000 364 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 CD74P04233 296 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 LPLP06858 475 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 UBBP0CG47 229 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 AKAIN1P0CW23 69 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 PRF1P14222 555 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 RAB3AP20336 220 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 GUCA1AP43080 201 aaPredicted RBP9.46□□□□□ -0.9
USP4-214ENST00000491791 NKX2-5P52952 324 aaPredicted RBP9.46□□□□□ -0.9
USP4-214ENST00000491791 SOX8P57073 446 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 ZNF121P58317 390 aaPredicted RBP9.46□□□□□ -0.9
USP4-214ENST00000491791 RPS18P62269 152 aaKnown RBP9.46□□□□□ -0.9
USP4-214ENST00000491791 ECH1Q13011 328 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 IKZF1Q13422 519 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 FCN2Q15485 313 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 HYAL4Q2M3T9 481 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 PHYHD1Q5SRE7 291 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 GLDNQ6ZMI3 551 aaPredicted RBP9.46□□□□□ -0.9
USP4-214ENST00000491791 PAQR4Q8N4S7 273 aaPredicted RBP9.46□□□□□ -0.9
USP4-214ENST00000491791 OR11H7Q8NGC8 314 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 OR8B12Q8NGG6 310 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 OR6N1Q8NGY5 312 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 OR14K1Q8NGZ2 314 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 OR2V1Q8NHB1 315 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 PHF21AQ96BD5 680 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 SEH1LQ96EE3 360 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 ADAT3Q96EY9 351 aaPredicted RBP9.46□□□□□ -0.9
USP4-214ENST00000491791 RADILQ96JH8 1075 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 UCN2Q96RP3 112 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 FAM173AQ9BQD7 235 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 ZNF416Q9BWM5 594 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 SRXN1Q9BYN0 137 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 RANBP3Q9H6Z4 567 aaPredicted RBP9.46□□□□□ -0.9
USP4-214ENST00000491791 RNF122Q9H9V4 155 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 GHRLQ9UBU3 117 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 KIAA1549Q9HCM3 1950 aa9.46□□□□□ -0.9
USP4-214ENST00000491791 TRAV18A0A075B6X5 111 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 A8MV72 311 aaPredicted RBP9.45□□□□□ -0.9
USP4-214ENST00000491791 RAB27BO00194 218 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 RER1O15258 196 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 CYTIPO60759 359 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 PRB1P04280 392 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 CHRM2P08172 466 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 CST2P09228 141 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 ANXA3P12429 323 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 CDAP32320 146 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 CD96P40200 585 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 ZNF84P51523 738 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 UCNP55089 124 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 CARD18P57730 90 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 MRPS15P82914 257 aaKnown RBP9.45□□□□□ -0.9
USP4-214ENST00000491791 GALK2Q01415 458 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 RBMS2Q15434 407 aaKnown RBP9.45□□□□□ -0.9
USP4-214ENST00000491791 TAF13Q15543 124 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 RSPO1Q2MKA7 263 aaPredicted RBP9.45□□□□□ -0.9
USP4-214ENST00000491791 B3GNTL1Q67FW5 361 aaPredicted RBP9.45□□□□□ -0.9
USP4-214ENST00000491791 UTS2BQ765I0 119 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 SLC36A1Q7Z2H8 476 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 OR5AS1Q8N127 324 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 GPR137CQ8N3F9 429 aa9.45□□□□□ -0.9
USP4-214ENST00000491791 ASCC1Q8N9N2 400 aaKnown RBP9.45□□□□□ -0.9
USP4-214ENST00000491791 OR4D6Q8NGJ1 314 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms