RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 Q8N7P7 452 aa13.23□□□□□ -0.29
USP48-210ENST00000489108 GJC3Q8NFK1 279 aa13.23□□□□□ -0.29
USP48-210ENST00000489108 OR2T6Q8NHC8 308 aa13.23□□□□□ -0.29
USP48-210ENST00000489108 R3HDM4Q96D70 268 aa13.23□□□□□ -0.29
USP48-210ENST00000489108 CCDC28BQ9BUN5 200 aa13.23□□□□□ -0.29
USP48-210ENST00000489108 KAAG1Q9UBP8 84 aa13.23□□□□□ -0.29
USP48-210ENST00000489108 DUX4Q9UBX2 424 aa13.23□□□□□ -0.29
USP48-210ENST00000489108 RPS6KA6Q9UK32 745 aa13.23□□□□□ -0.29
USP48-210ENST00000489108 NDUFAF1Q9Y375 327 aa13.23□□□□□ -0.29
USP48-210ENST00000489108 LOC100653049A0A140TA62 436 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 KRT34O76011 436 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 PTBP3O95758 552 aaKnown RBP13.22□□□□□ -0.29
USP48-210ENST00000489108 GRPP07492 148 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 ZNF26P17031 533 aaPredicted RBP13.22□□□□□ -0.29
USP48-210ENST00000489108 SAA4P35542 130 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 SLC9A3P48764 834 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 PRKCDQ05655 676 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 KCNMB1Q16558 191 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 MEP1BQ16820 701 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 PGAP1Q75T13 922 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 FAM122BQ7Z309 247 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 DPP10Q8N608 796 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 GCSAMQ8N6F7 178 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 PLPP7Q8NBV4 271 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 OR4C13Q8NGP0 309 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 ZNF570Q96NI8 536 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 SSX3Q99909 188 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 HDHD2Q9H0R4 259 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 SYT4Q9H2B2 425 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 A4GNTQ9UNA3 340 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 POLR1DQ9Y2S0 133 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 LHFPL6Q9Y693 200 aa13.22□□□□□ -0.29
USP48-210ENST00000489108 F5H5K5 113 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 LHBP01229 141 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 LCATP04180 440 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 ACSM4P0C7M7 580 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 CD28P10747 220 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 KRTAP27-1Q3LI81 207 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 DEFB121Q5J5C9 76 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 ZBTB37Q5TC79 503 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 CMTM4Q8IZR5 234 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 TNFRSF14Q92956 283 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 WWC2-AS2Q96NR7 200 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 CCL13Q99616 98 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 ADAT1Q9BUB4 502 aaKnown RBP13.21□□□□□ -0.29
USP48-210ENST00000489108 NUAK2Q9H093 628 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 MAB21L2Q9Y586 359 aa13.21□□□□□ -0.29
USP48-210ENST00000489108 hCG_1807616A0A1W2PRN6 198 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 A6NLC8 198 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 CD300LBA8K4G0 201 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 GMDSO60547 372 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 FBXO24O75426 580 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 IGLL1P15814 213 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 YAP1P46937 504 aaKnown RBP13.2□□□□□ -0.3
USP48-210ENST00000489108 CENPAP49450 140 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 SLC18A1P54219 525 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 MALLQ13021 153 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 KRR1Q13601 381 aaKnown RBP13.2□□□□□ -0.3
USP48-210ENST00000489108 NFYCQ13952 458 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 TEX36Q5VZQ5 186 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 BEND2Q8NDZ0 799 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 C17orf50Q8WW18 174 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 RORBQ92753 470 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 CLPTM1LQ96KA5 538 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 SLC22A4Q9H015 551 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 NMNAT1Q9HAN9 279 aaPredicted RBP13.2□□□□□ -0.3
USP48-210ENST00000489108 NKIRAS1Q9NYS0 192 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 RHCGQ9UBD6 479 aa13.2□□□□□ -0.3
USP48-210ENST00000489108 NOP16Q9Y3C1 178 aaKnown RBP13.2□□□□□ -0.3
USP48-210ENST00000489108 CDC42EP2O14613 210 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 ANGPT2O15123 496 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 GPR4P46093 362 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 UBE2E1P51965 193 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 ZBED5Q49AG3 693 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 WDR93Q6P2C0 686 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 CRIP3Q6Q6R5 217 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 TBPL2Q6SJ96 375 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 MRPL21Q7Z2W9 205 aaKnown RBP13.19□□□□□ -0.3
USP48-210ENST00000489108 FAM156AQ8NDB6 213 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 OR4F17Q8NGA8 305 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 PRRC1Q96M27 445 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 DMRTB1Q96MA1 342 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 OR4F4Q96R69 305 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 RANBP3Q9H6Z4 567 aaPredicted RBP13.19□□□□□ -0.3
USP48-210ENST00000489108 VSX1Q9NZR4 365 aaPredicted RBP13.19□□□□□ -0.3
USP48-210ENST00000489108 AURKCQ9UQB9 309 aa13.19□□□□□ -0.3
USP48-210ENST00000489108 MEGF11A6BM72 1044 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 ADARB2-AS1A8MUL3 147 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 SOCS2O14508 198 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 WDR38Q5JTN6 314 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 NANOGP8Q6NSW7 305 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 CFAP77Q6ZQR2 320 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 PTCHD4Q6ZW05 846 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 NDUFA11Q86Y39 141 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 FAM216BQ8N7L0 139 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 ACOT11Q8WXI4 607 aaPredicted RBP13.18□□□□□ -0.3
USP48-210ENST00000489108 TPD52L3Q96J77 140 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 C7orf26Q96N11 449 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 TSSK2Q96PF2 358 aa13.18□□□□□ -0.3
USP48-210ENST00000489108 PITX2Q99697 317 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms