RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 DCPSQ96C86 337 aaKnown RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 NRBF2Q96F24 287 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 DYNLL2Q96FJ2 89 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 PRRC1Q96M27 445 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 C18orf15Q96N68 181 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 ZNF396Q96N95 335 aaPredicted RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 CCDC77Q9BR77 488 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 LZTS2Q9BRK4 669 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 RSG1Q9BU20 258 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 TMEM243Q9BU79 118 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 SLIRPQ9GZT3 109 aaKnown RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 DHX35Q9H5Z1 703 aaKnown RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 TMEM38AQ9H6F2 299 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 MYOZ1Q9NP98 299 aaPredicted RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 EXOSC4Q9NPD3 245 aaKnown RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 ACP6Q9NPH0 428 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 MED4Q9NPJ6 270 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 MTCH1Q9NZJ7 389 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 CBY1Q9Y3M2 126 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 COMMD3-BMI1R4GMX3 469 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 UBN2Q6ZU65 1347 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 RAD50Q92878 1312 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 PCDH11XQ9BZA7 1347 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 BRD4O60885 1362 aaPredicted RBP1.04□□□□□ -2.24
SMC4-220ENST00000488017 FHOD3Q2V2M9 1422 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 SMARCA2P51531 1590 aa1.04□□□□□ -2.24
SMC4-220ENST00000488017 BRCA1P38398 1863 aaKnown RBP1.03□□□□□ -2.24
SMC4-220ENST00000488017 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 IGKV1-27A0A075B6S5 117 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 IGHV3-72A0A0B4J1Y9 119 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 IGHV1-69DA0A0B4J2H0 117 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 IGHV7-4-1A0A0J9YVY3 117 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 OR5H1A6NKK0 313 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 SYCE1LA8MT33 242 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 BTNL10A8MVZ5 291 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 C16orf90A8MZG2 172 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 TEX46H3BTG2 121 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 GABRPO00591 440 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 NME4O00746 187 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 CDC40O60508 579 aaKnown RBP eCLIP1.03□□□□□ -2.24
SMC4-220ENST00000488017 HUS1O60921 280 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 WBP4O75554 376 aaKnown RBP1.03□□□□□ -2.24
SMC4-220ENST00000488017 SERPINB7O75635 380 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 OR2F2O95006 317 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 CCNB2O95067 398 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 LSM8O95777 96 aaKnown RBP1.03□□□□□ -2.24
SMC4-220ENST00000488017 EIF2S2P20042 333 aaKnown RBP1.03□□□□□ -2.24
SMC4-220ENST00000488017 TALDO1P37837 337 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 UQCRFS1P47985 274 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 RAB7AP51149 207 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 C21orf59P57076 290 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 RGS8P57771 180 aaPredicted RBP1.03□□□□□ -2.24
SMC4-220ENST00000488017 CTAG1AP78358 180 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 CCNA1P78396 465 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 TPTE2P1Q5T6R2 138 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 CARD17Q5XLA6 110 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 TTC23LQ6PF05 361 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 IQCF2Q8IXL9 164 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 OR5T1Q8NG75 326 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 OR9G4Q8NGQ1 327 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 FAM81AQ8TBF8 368 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 NRGNQ92686 78 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 N4BP2L2Q92802 583 aaPredicted RBP1.03□□□□□ -2.24
SMC4-220ENST00000488017 GHSRQ92847 366 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 WDR34Q96EX3 536 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 FAM192AQ9GZU8 254 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 TMEM185BQ9H7F4 350 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 TMEM165Q9HC07 324 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 MRM3Q9HC36 420 aaKnown RBP1.03□□□□□ -2.24
SMC4-220ENST00000488017 NEK6Q9HC98 313 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 ZNF160Q9HCG1 818 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 C21orf62Q9NYP8 219 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 RABL2BQ9UNT1 228 aa1.03□□□□□ -2.24
SMC4-220ENST00000488017 TRAV6A0A075B6T7 132 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 TMEM120BA0PK00 339 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 ERICH4A6NGS2 130 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 ZNF98A6NK75 572 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 EIF1BO60739 113 aaKnown RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 PAHP00439 452 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 OXTP01178 125 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 IGHV3-11P01762 117 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 CLTAP09496 248 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 P0C880 135 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 PGA4P0DJD7 388 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 PGA3P0DJD8 388 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 PGA5P0DJD9 388 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 GZMAP12544 262 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 CTRB1P17538 263 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 USF1P22415 310 aaPredicted RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 CD70P32970 193 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 EIF1P41567 113 aaKnown RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 PRLHRP49683 370 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 GDI2P50395 445 aaKnown RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 SERPINB8P50452 374 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 ZNF121P58317 390 aaPredicted RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 UBE2MP61081 183 aaKnown RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 RPS15P62841 145 aaKnown RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 RBX1P62877 108 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 SIGLEC14Q08ET2 396 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 FUT5Q11128 374 aa1.02□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms