RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SLC17A2O00624 439 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 PPM1DO15297 605 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 ZNF354AO60765 605 aaPredicted RBP14.88□□□□□ -0.03
COL7A1-210ENST00000487017 OTPQ5XKR4 325 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 GALNT16Q8N428 558 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 OR2AE1Q8NHA4 323 aa14.88□□□□□ -0.03
COL7A1-210ENST00000487017 GLI3P10071 1580 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 A0A087WUJ7 227 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 C20orf202A1L168 122 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 NRASP01111 189 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 MAMSTRQ6ZN01 415 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 GPR32P1Q8NGA4 272 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 GPX8Q8TED1 209 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 SIGLEC7Q9Y286 467 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 PYCARD-AS1I3L0S3 204 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 TRAF3IP2O43734 574 aaPredicted RBP14.87□□□□□ -0.03
COL7A1-210ENST00000487017 SCO1O75880 301 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 WNT11O96014 354 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 ACKR3P25106 362 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 HMGA2P52926 109 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 FAM74A1Q5RGS3 127 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 A0A0B4J2E0 115 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 A0A1B0GX12 115 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 LGALS4P56470 323 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 BAMBIQ13145 260 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 POMT2Q9UKY4 750 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 OPRM1P35372 400 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 GUCA2AQ02747 115 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 SHBQ15464 509 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 HAGHQ16775 308 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 TMEM268Q5VZI3 342 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 DHRS9Q9BPW9 319 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 ZNF576Q9H609 170 aa14.87□□□□□ -0.03
COL7A1-210ENST00000487017 EXOGQ9Y2C4 368 aaKnown RBP14.87□□□□□ -0.03
COL7A1-210ENST00000487017 MICAL3Q7RTP6 2002 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 P2RX3P56373 397 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 CMTM2Q8TAZ6 248 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 REEP6Q96HR9 211 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 LANCL2Q9NS86 450 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 GDF2Q9UK05 429 aaPredicted RBP14.86□□□□□ -0.03
COL7A1-210ENST00000487017 TRIM77I1YAP6 450 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 SSSCA1O60232 199 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 LRP3O75074 770 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 ATF1P18846 271 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 CLLU1Q5K131 121 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 RPUSD3Q6P087 351 aaKnown RBP14.86□□□□□ -0.03
COL7A1-210ENST00000487017 DTWD2Q8NBA8 298 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 MED9Q9NWA0 146 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 CDK5RAP2Q96SN8 1893 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 PLPP2O43688 288 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 IGHA2P01877 340 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 OR5H8P0DN80 308 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 SELEP16581 610 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 MRPL22Q9NWU5 206 aaKnown RBP14.86□□□□□ -0.03
COL7A1-210ENST00000487017 MTCH1Q9NZJ7 389 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 ZNF816-ZNF321PA0A0X1KG74 233 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 AGFG1P52594 562 aaKnown RBP14.86□□□□□ -0.03
COL7A1-210ENST00000487017 PCBP4P57723 403 aaKnown RBP14.86□□□□□ -0.03
COL7A1-210ENST00000487017 ZNF793Q6ZN11 406 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 ZNF321PQ8N8H1 164 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 OTOSQ8NHW6 89 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 FBXW5Q969U6 566 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 THOC3Q96J01 351 aaKnown RBP14.86□□□□□ -0.03
COL7A1-210ENST00000487017 SLC23A1Q9UHI7 598 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 SSUH2Q9Y2M2 353 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 PTCRAQ6ISU1 281 aaPredicted RBP14.86□□□□□ -0.03
COL7A1-210ENST00000487017 OR5AS1Q8N127 324 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 WDR34Q96EX3 536 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 FN3KRPQ9HA64 309 aa14.86□□□□□ -0.03
COL7A1-210ENST00000487017 IGHV3-64DA0A0J9YX35 117 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 NKX6-3A6NJ46 265 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 PPP5D1E7EU14 171 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 XRCC2O43543 280 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 UBE2G2P60604 165 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 KHDC1LQ5JSQ8 128 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 OR8B4Q96RC9 309 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 TBX21Q9UL17 535 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 PRSS44E7EML9 344 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 CNIH1O95406 144 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 FZD2Q14332 565 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 PNLIPRP3Q17RR3 467 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 CD300LDQ6UXZ3 194 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 ARHGEF39Q8N4T4 335 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 ZNF485Q8NCK3 441 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 C1QTNF6Q9BXI9 259 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 RFPL4AA6NLU0 287 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 FAM166BA8MTA8 275 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 RFPL4AL1F8VTS6 287 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 ITGBL1O95965 494 aaPredicted RBP14.85□□□□□ -0.03
COL7A1-210ENST00000487017 RAB1AP62820 205 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 ZFP62Q8NB50 900 aaPredicted RBP14.85□□□□□ -0.03
COL7A1-210ENST00000487017 C8orf44Q96CB5 159 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 ZNF121P58317 390 aaPredicted RBP14.85□□□□□ -0.03
COL7A1-210ENST00000487017 TMEM196Q5HYL7 178 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 PLEKHB1Q9UF11 243 aaPredicted RBP14.85□□□□□ -0.03
COL7A1-210ENST00000487017 POLDIP2Q9Y2S7 368 aa14.85□□□□□ -0.03
COL7A1-210ENST00000487017 MRPS2Q9Y399 296 aaKnown RBP14.85□□□□□ -0.03
COL7A1-210ENST00000487017 GON4LQ3T8J9 2241 aa14.84□□□□□ -0.03
COL7A1-210ENST00000487017 MYO9BQ13459 2157 aa14.84□□□□□ -0.03
COL7A1-210ENST00000487017 PRSS23O95084 383 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms