RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 OR8G1Q15617 311 aa18■□□□□ 0.47
USP40-215ENST00000484528 NLRC3Q7RTR2 1065 aa18■□□□□ 0.47
USP40-215ENST00000484528 BOLLQ8N9W6 283 aaKnown RBP18■□□□□ 0.47
USP40-215ENST00000484528 OR11L1Q8NGX0 322 aa18■□□□□ 0.47
USP40-215ENST00000484528 OR2T4Q8NH00 348 aa18■□□□□ 0.47
USP40-215ENST00000484528 RAB40AQ8WXH6 277 aa18■□□□□ 0.47
USP40-215ENST00000484528 SPTSSAQ969W0 71 aa18■□□□□ 0.47
USP40-215ENST00000484528 PLEKHA8Q96JA3 519 aa18■□□□□ 0.47
USP40-215ENST00000484528 DDOQ99489 341 aa18■□□□□ 0.47
USP40-215ENST00000484528 ADAT1Q9BUB4 502 aaKnown RBP18■□□□□ 0.47
USP40-215ENST00000484528 N6AMT1Q9Y5N5 214 aa18■□□□□ 0.47
USP40-215ENST00000484528 COMMD3-BMI1R4GMX3 469 aa18■□□□□ 0.47
USP40-215ENST00000484528 CD300LBA8K4G0 201 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 SPRY1O43609 319 aaPredicted RBP17.99■□□□□ 0.47
USP40-215ENST00000484528 KRT36O76013 467 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 GASTP01350 101 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 SPARCP09486 303 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 HKR1P10072 659 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 RAD23AP54725 363 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 GLYATL3Q5SZD4 288 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 RPL13AP3Q6NVV1 102 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 LRRN1Q6UXK5 716 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 DCXRQ7Z4W1 244 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 LNX2Q8N448 690 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 SLC37A3Q8NCC5 494 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 OR4C15Q8NGM1 316 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 DACT3Q96B18 629 aaPredicted RBP17.99■□□□□ 0.47
USP40-215ENST00000484528 NDE1Q9NXR1 346 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 CLN8Q9UBY8 286 aa17.99■□□□□ 0.47
USP40-215ENST00000484528 MDFIC2A0A1B0GVS7 189 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 DCTN3O75935 186 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 CCNB2O95067 398 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 SOX14O95416 240 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 SLC2A1P11166 492 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 PRKXP51817 358 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 HMGA2P52926 109 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 CRMP1Q14194 572 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 ZNF362Q5T0B9 420 aaPredicted RBP17.98■□□□□ 0.47
USP40-215ENST00000484528 ZNF770Q6IQ21 691 aaPredicted RBP17.98■□□□□ 0.47
USP40-215ENST00000484528 DCDC5Q6ZRR9 648 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 SPATC1Q76KD6 591 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 CELF2-AS1Q8N7Q2 184 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 AQP11Q8NBQ7 271 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 Q8TCH9 128 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 TAF15Q92804 592 aaKnown RBP eCLIP17.98■□□□□ 0.47
USP40-215ENST00000484528 UPRTQ96BW1 309 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 NUDT16L1Q9BRJ7 211 aaKnown RBP17.98■□□□□ 0.47
USP40-215ENST00000484528 COPS4Q9BT78 406 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 TSSK6Q9BXA6 273 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 MMADHCQ9H3L0 296 aaPredicted RBP17.98■□□□□ 0.47
USP40-215ENST00000484528 VNN3Q9NY84 501 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 IL20Q9NYY1 176 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 PKD1L1Q8TDX9 2849 aa17.98■□□□□ 0.47
USP40-215ENST00000484528 GGT3PA6NGU5 568 aa17.97■□□□□ 0.47
USP40-215ENST00000484528 WDR25Q64LD2 544 aaPredicted RBP17.97■□□□□ 0.47
USP40-215ENST00000484528 SFRP4Q6FHJ7 346 aaPredicted RBP17.97■□□□□ 0.47
USP40-215ENST00000484528 RASSF6Q6ZTQ3 369 aa17.97■□□□□ 0.47
USP40-215ENST00000484528 PIGWQ7Z7B1 504 aa17.97■□□□□ 0.47
USP40-215ENST00000484528 ZNF511Q8NB15 262 aa17.97■□□□□ 0.47
USP40-215ENST00000484528 OR4Q3Q8NH05 313 aa17.97■□□□□ 0.47
USP40-215ENST00000484528 TRIM15Q9C019 465 aa17.97■□□□□ 0.47
USP40-215ENST00000484528 CENPMQ9NSP4 180 aa17.97■□□□□ 0.47
USP40-215ENST00000484528 ARMC1Q9NVT9 282 aa17.97■□□□□ 0.47
USP40-215ENST00000484528 ACTR3BQ9P1U1 418 aa17.97■□□□□ 0.47
USP40-215ENST00000484528 U3KQV3 271 aa17.97■□□□□ 0.47
USP40-215ENST00000484528 TCRBV5S2A0A599 114 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 C22orf46C9J442 243 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 CLUP10909 449 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 CPT2P23786 658 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 OTX1P32242 354 aaPredicted RBP17.96■□□□□ 0.47
USP40-215ENST00000484528 MAGEA2P43356 314 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 FOXL1Q12952 345 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 TAF13Q15543 124 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 SPATS1Q496A3 300 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 DRAM2Q6UX65 266 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 BRD3OSQ6XYD6 125 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 LINC00471Q8N535 108 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 FITM2Q8N6M3 262 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 OR56B2PQ8NGI1 322 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 OR6K6Q8NGW6 343 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 ERGIC1Q969X5 290 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 SLAMF6Q96DU3 332 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 FN3KRPQ9HA64 309 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 RNF7Q9UBF6 113 aa17.96■□□□□ 0.47
USP40-215ENST00000484528 KIR2DS1A0A191URI9 304 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 C3orf80F5H4A9 247 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 PHYHO14832 338 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 FSTL3O95633 263 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 PLATP00750 562 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 PPIAL4GP0DN37 164 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 SPI1P17947 270 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 FMO3P31513 532 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 ENTPD1P49961 510 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 FGF12P61328 243 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 SLC9A3R2Q15599 337 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 ZNF841Q6ZN19 808 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 SGMS2Q8NHU3 365 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 TECTBQ96PL2 329 aa17.95■□□□□ 0.46
USP40-215ENST00000484528 ZMAT3Q9HA38 289 aaKnown RBP17.95■□□□□ 0.46
USP40-215ENST00000484528 CTSZQ9UBR2 303 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms