RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 MGAMO43451 1857 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 MYO5AQ9Y4I1 1855 aaKnown RBP2.84□□□□□ -1.95
PTCD3-211ENST00000476215 PTPRFP10586 1907 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 SMCO2A6NFE2 343 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 AIM2O14862 343 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 VAMP5O95183 116 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 SNX4O95219 450 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 SNAI1O95863 264 aaPredicted RBP2.84□□□□□ -1.95
PTCD3-211ENST00000476215 ADRA2AP08913 450 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 CYBAP13498 195 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 RAB3BP20337 219 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 NPY1RP25929 384 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 PBLDP30039 288 aaPredicted RBP2.84□□□□□ -1.95
PTCD3-211ENST00000476215 ALX1Q15699 326 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 PLET1Q6UQ28 207 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 CDH26Q8IXH8 852 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 RASD2Q96D21 266 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 OR5B12Q96R08 314 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 SPIN2AQ99865 258 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 SPIN2BQ9BPZ2 258 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 RSPO3Q9BXY4 272 aaPredicted RBP2.84□□□□□ -1.95
PTCD3-211ENST00000476215 SYNDIG1Q9H7V2 258 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 SLC38A10Q9HBR0 1119 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 SIRT7Q9NRC8 400 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 CTSFQ9UBX1 484 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 ZNF835Q9Y2P0 537 aa2.84□□□□□ -1.95
PTCD3-211ENST00000476215 TTC41PQ6P2S7 1318 aa2.84□□□□□ -1.96
PTCD3-211ENST00000476215 TTC28Q96AY4 2481 aa2.84□□□□□ -1.96
PTCD3-211ENST00000476215 RBBP6Q7Z6E9 1792 aaKnown RBP2.84□□□□□ -1.96
PTCD3-211ENST00000476215 CDH23Q9H251 3354 aa2.84□□□□□ -1.96
PTCD3-211ENST00000476215 SIPA1L1O43166 1804 aa2.84□□□□□ -1.96
PTCD3-211ENST00000476215 DOCK2Q92608 1830 aa2.84□□□□□ -1.96
PTCD3-211ENST00000476215 DOCK1Q14185 1865 aa2.84□□□□□ -1.96
PTCD3-211ENST00000476215 MYH1P12882 1939 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 LOC285556D6RIA3 1793 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 SMCO3A2RU48 225 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 GOLGA8OA6NCC3 632 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 ZNF716A6NP11 495 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 ZNF705GA8MUZ8 300 aaPredicted RBP2.83□□□□□ -1.96
PTCD3-211ENST00000476215 TCP11X1B4DZS4 312 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 GOLGA8NF8WBI6 632 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 UBXN8O00124 270 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 CLOCKO15516 846 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 RP2O75695 350 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 SERPINA5P05154 406 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 ZNF735P0CB33 412 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 CCNB1P14635 433 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 F2RP25116 425 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 SHHQ15465 462 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 XKR7Q5GH72 579 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 FAM78AQ5JUQ0 283 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 UBALD2Q8IYN6 164 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 DEFB123Q8N688 67 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 RBMXL1Q96E39 390 aaKnown RBP2.83□□□□□ -1.96
PTCD3-211ENST00000476215 ZNF681Q96N22 645 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 NUP58Q9BVL2 599 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 OR51M1Q9H341 326 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 UXTQ9UBK9 157 aaPredicted RBP2.83□□□□□ -1.96
PTCD3-211ENST00000476215 TMEM14AQ9Y6G1 99 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 PLXNB2O15031 1838 aa2.83□□□□□ -1.96
PTCD3-211ENST00000476215 TRANK1O15050 2925 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 EYSQ5T1H1 3165 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 CDK5RAP2Q96SN8 1893 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 IGLV1-50A0A075B6I6 118 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 RAD51BO15315 384 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 RBFOX2O43251 390 aaKnown RBP eCLIP2.82□□□□□ -1.963e-7■□□□□ 9.8
PTCD3-211ENST00000476215 RNF13O43567 381 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 NMT2O60551 498 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 WBP4O75554 376 aaKnown RBP2.82□□□□□ -1.96
PTCD3-211ENST00000476215 OR2J3O76001 311 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 UBTFL6P0CB48 400 aaPredicted RBP2.82□□□□□ -1.96
PTCD3-211ENST00000476215 ZNF286BP0CG31 522 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 OR5H8P0DN80 308 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 HSPD1P10809 573 aaKnown RBP2.82□□□□□ -1.96
PTCD3-211ENST00000476215 MUC1P15941 1255 aaPredicted RBP2.82□□□□□ -1.96
PTCD3-211ENST00000476215 TCN2P20062 427 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 CEACAM3P40198 252 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 CDH6P55285 790 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 SNAP25P60880 206 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 PON2Q15165 354 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 PPM1LQ5SGD2 360 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 METTL21CQ5VZV1 264 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 Q5W150 140 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 PRMT9Q6P2P2 845 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 OR7G2Q8NG99 324 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 DUS3LQ96G46 650 aaKnown RBP2.82□□□□□ -1.96
PTCD3-211ENST00000476215 ZNF382Q96SR6 550 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 PLIN2Q99541 437 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 RACGAP1Q9H0H5 632 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 SAV1Q9H4B6 383 aaPredicted RBP2.82□□□□□ -1.96
PTCD3-211ENST00000476215 UBE2ZQ9H832 354 aaPredicted RBP2.82□□□□□ -1.96
PTCD3-211ENST00000476215 GPATCH2LQ9NWQ4 482 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 ELP1O95163 1332 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 ROBO3Q96MS0 1386 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 XIRP2A4UGR9 3374 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 FOCADQ5VW36 1801 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 ATAD5Q96QE3 1844 aa2.82□□□□□ -1.96
PTCD3-211ENST00000476215 MUC3AQ02505 3323 aa2.81□□□□□ -1.96
PTCD3-211ENST00000476215 CHD7Q9P2D1 2997 aa2.81□□□□□ -1.96
PTCD3-211ENST00000476215 A0A0D9SFI3 127 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms