RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 TCP1P17987 556 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 TUBG1P23258 451 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 NPY1RP25929 384 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 SLC11A1P49279 550 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 FABP6P51161 128 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 CLDN18P56856 261 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 RPL23P62829 140 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 RPEL1Q2QD12 228 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 MPV17L2Q567V2 206 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 PIP5KL1Q5T9C9 394 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 ADNP2Q6IQ32 1131 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 SLC16A13Q7RTY0 426 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 FAM122BQ7Z309 247 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 LRRC75AQ8NAA5 344 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 OR5AR1Q8NGP9 310 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 OR51F2Q8NH61 342 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 GPX8Q8TED1 209 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 CA5BP1Q8WTZ4 195 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 ESR2Q92731 530 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 RAB1CQ92928 201 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 C9orf72Q96LT7 481 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 SAMD10Q9BYL1 202 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 FGF23Q9GZV9 251 aaPredicted RBP1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 CLSTN2Q9H4D0 955 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 C8orf33Q9H7E9 229 aaPredicted RBP1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 TMEM27Q9HBJ8 222 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 CRLF2Q9HC73 371 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 MYOZ1Q9NP98 299 aaPredicted RBP1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 SIRT7Q9NRC8 400 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 TUBG2Q9NRH3 451 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 UBIAD1Q9Y5Z9 338 aa1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 AHDC1Q5TGY3 1603 aaPredicted RBP1.64□□□□□ -2.15
CCDC88A-212ENST00000474059 IGHV3OR16-9A0A0B4J2B5 98 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 IGHV1-69DA0A0B4J2H0 117 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 GOLGA6L7A0A1B0GV03 622 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 COLCA2A8K830 154 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 PDZK1P1A8MUH7 402 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 KRBOX1C9JBD0 128 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 H0YJW9 148 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 SIVA1O15304 175 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 CCNKO75909 580 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 SLC22A5O76082 557 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 SCELO95171 688 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 TDP2O95551 362 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF806P0C7X5 589 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 CD37P11049 281 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 RALBP11234 206 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 GABRG2P18507 467 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 POLR2IP36954 125 aaKnown RBP1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 OPRK1P41145 380 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 MAGEA1P43355 309 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 GPR1P46091 355 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 CXCL12P48061 93 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 GFERP55789 205 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 CLDN8P56748 225 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 TAS2R31P59538 309 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 CACNG7P62955 275 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 CRADDP78560 199 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 CDK5Q00535 292 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 RBMY1FQ15415 496 aaKnown RBP1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 GABRA6Q16445 453 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 PLCXD3Q63HM9 321 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 ANGPTL8Q6UXH0 198 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 VKORC1L1Q8N0U8 176 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF709Q8N972 641 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 NECAP1Q8NC96 275 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF461Q8TAF7 563 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 CIRBP-AS1Q8TBR5 109 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 BTN2A3PQ96KV6 586 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 CALN1Q9BXU9 219 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF835Q9Y2P0 537 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 TUBGCP6Q96RT7 1819 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 MROH7Q68CQ1 1323 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 PLA2R1Q13018 1463 aa1.63□□□□□ -2.15
CCDC88A-212ENST00000474059 GABRR3A8MPY1 467 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF99A8MXY4 864 aaPredicted RBP1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 ANKRD65E5RJM6 399 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 XRCC2O43543 280 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 MPZL1O95297 269 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 CCNE2O96020 404 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 TACSTD2P09758 323 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF286BP0CG31 522 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 C1GALT1C1LP0DN25 315 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 CD82P27701 267 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 LOXP28300 417 aaPredicted RBP1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 PFN2P35080 140 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 BMI1P35226 326 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 TALDO1P37837 337 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 MYCNOSP40205 109 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 CCT6AP40227 531 aaKnown RBP1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 NDUFA8P51970 172 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 TAS2R46P59540 309 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 RAB11AP62491 216 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 SPAG1Q07617 926 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 CYP24A1Q07973 514 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 DNAJC3Q13217 504 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 RAB11BQ15907 218 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 LY6EQ16553 131 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 KLHL40Q2TBA0 621 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF829Q3KNS6 432 aaPredicted RBP1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms