RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 NOXO1Q8NFA2 376 aa12.18□□□□□ -0.46
CCDC88A-211ENST00000471947 OR5T2Q8NGG2 359 aa12.18□□□□□ -0.46
CCDC88A-211ENST00000471947 KIAA1143Q96AT1 154 aaPredicted RBP12.18□□□□□ -0.46
CCDC88A-211ENST00000471947 TMPRSS13Q9BYE2 586 aa12.18□□□□□ -0.46
CCDC88A-211ENST00000471947 CA10Q9NS85 328 aa12.18□□□□□ -0.46
CCDC88A-211ENST00000471947 ZNF319Q9P2F9 582 aa12.18□□□□□ -0.46
CCDC88A-211ENST00000471947 ERP29P30040 261 aaKnown RBP12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 MTCP1P56278 107 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 ZNF100Q8IYN0 542 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 BMPERQ8N8U9 685 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 CNEP1R1Q8N9A8 125 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 ZNF519Q8TB69 540 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 MARVELD1Q9BSK0 173 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 KLF7O75840 302 aaPredicted RBP12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 SFTPBP07988 381 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 COX6A1P12074 109 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 ZNF24P17028 368 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 AMY2BP19961 511 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 MAP2K6P52564 334 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 ARHGDIBP52566 201 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 STK11Q15831 433 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 PHYHD1Q5SRE7 291 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 OR5AS1Q8N127 324 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 PNLDC1Q8NA58 520 aaKnown RBP12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 OR1M1Q8NGA1 313 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 BCL2L14Q9BZR8 327 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 TWSG1Q9GZX9 223 aa12.17□□□□□ -0.46
CCDC88A-211ENST00000471947 IGHV1-45A0A0A0MS14 117 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 A0A1W2PQD3 144 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 M0R233 179 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 ZNF254O75437 659 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 ABHD16AO95870 558 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 HLA-AP01891 365 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 TTRP02766 147 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 RBMXP38159 391 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 MAGEA5P43359 124 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 GZMKP49863 264 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 MMP15P51511 669 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 S100A10P60903 97 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 IL11RAQ14626 422 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 CLEC1AQ8NC01 280 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 OR11H4Q8NGC9 324 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 OR5M9Q8NGP3 310 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 OR10D3Q8NH80 312 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 OXGR1Q96P68 337 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 NAA11Q9BSU3 229 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 POFUT1Q9H488 388 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 COMMD9Q9P000 198 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 CCDC187A0A096LP49 1063 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 NUPL2O15504 423 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 SOCS1O15524 211 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 MRPL33O75394 65 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 SCO1O75880 301 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 RAB40ALP0C0E4 278 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 AVPR2P30518 371 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 CSNK2A1P68400 391 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 CSNK2A3Q8NEV1 391 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 RAB40AQ8WXH6 277 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 CHCHD2Q9Y6H1 151 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 CACNA1BQ00975 2339 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 A0A1B0GV50 99 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 FTCDNL1E5RQL4 147 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 M0R135 149 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 DHHO43323 396 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 ZNF432O94892 652 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 HRH1P35367 487 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 HGDQ93099 445 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 ZNF799Q96GE5 643 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 SRXN1Q9BYN0 137 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 LHFPL6Q9Y693 200 aa12.16□□□□□ -0.46
CCDC88A-211ENST00000471947 AKAIN1P0CW23 69 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 GGTLC2Q14390 218 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 PLA1AQ53H76 456 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 UTP23Q9BRU9 249 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 TMEM59Q9BXS4 323 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 ACTR6Q9GZN1 396 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 NOSIPQ9Y314 301 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 PLCE1Q9P212 2302 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 SLC17A2O00624 439 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 TO15178 435 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 GLSO94925 669 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 HOXB5P09067 269 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 TSC22D1Q15714 1073 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 EXT1Q16394 746 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 P4HA3Q7Z4N8 544 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 CDH24Q86UP0 819 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 GABRG1Q8N1C3 465 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 GPX7Q96SL4 187 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 KCNK17Q96T54 332 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 PIGQQ9BRB3 760 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 METTL8Q9H825 291 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 NXT1Q9UKK6 140 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 BCL2A1Q16548 175 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 GSG1Q2KHT4 349 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 THEM4Q5T1C6 240 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 SLC23A3Q6PIS1 610 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 MOB3CQ70IA8 216 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 BPHLQ86WA6 291 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 HDHD3Q9BSH5 251 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 B3GAT1Q9P2W7 334 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms