RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 ATPIF1Q9UII2 106 aa16.55■□□□□ 0.24
SMC4-209ENST00000468653 PRRC2CQ9Y520 2896 aaKnown RBP16.55■□□□□ 0.24
SMC4-209ENST00000468653 MBD3L4A6NDZ8 208 aaPredicted RBP16.54■□□□□ 0.24
SMC4-209ENST00000468653 MBD3L3A6NE82 208 aaPredicted RBP16.54■□□□□ 0.24
SMC4-209ENST00000468653 MBD3L5A6NJ08 208 aaPredicted RBP16.54■□□□□ 0.24
SMC4-209ENST00000468653 CALCBP10092 127 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 RAB1AP62820 205 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 RGS21Q2M5E4 152 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 SNAI3Q3KNW1 292 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 LINC00303Q3SY05 128 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 HIKESHIQ53FT3 197 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 C1orf185Q5T7R7 199 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 VWA1Q6PCB0 445 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 DPPA2Q7Z7J5 298 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 CD163Q86VB7 1156 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 OR51A2Q8NGJ7 313 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 MBD3L2Q8NHZ7 208 aaPredicted RBP16.54■□□□□ 0.24
SMC4-209ENST00000468653 NANOS1Q8WY41 292 aaKnown RBP16.54■□□□□ 0.24
SMC4-209ENST00000468653 LYZL4Q96KX0 146 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 SDHCQ99643 169 aaPredicted RBP16.54■□□□□ 0.24
SMC4-209ENST00000468653 STEAP1Q9UHE8 339 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 IGF2RP11717 2491 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 GTF3C1Q12789 2109 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 UBL3O95164 117 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 CNOT4O95628 575 aaKnown RBP16.54■□□□□ 0.24
SMC4-209ENST00000468653 IGLV3-1P01715 115 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 APOA1P02647 267 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 DDOSTP39656 456 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 HGFACQ04756 655 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 PLP2Q04941 152 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 FOXF2Q12947 444 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 OR4M1Q8NGD0 313 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 OR14K1Q8NGZ2 314 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 FAM57AQ8TBR7 257 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 SOSTQ9BQB4 213 aa16.54■□□□□ 0.24
SMC4-209ENST00000468653 RTTNQ86VV8 2226 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 ZNF503-AS2A6NEH8 195 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 MTRF1O75570 445 aaKnown RBP16.53■□□□□ 0.24
SMC4-209ENST00000468653 COX5BP10606 129 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 RAB3AP20336 220 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 PTBP1P26599 531 aaKnown RBP eCLIP16.53■□□□□ 0.24
SMC4-209ENST00000468653 BDKRB2P30411 391 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 RAB11BQ15907 218 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 TBRG1Q3YBR2 411 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 UBE2NLQ5JXB2 153 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 RTL6Q6ICC9 239 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 Q6ZT83 130 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 SEM1Q6ZVN7 128 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 LYSMD2Q8IV50 215 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 NKAIN3Q8N8D7 197 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 GDPD1Q8N9F7 314 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 OR1M1Q8NGA1 313 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 CMTM3Q96MX0 182 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 C14orf119Q9NWQ9 140 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 OR5V1Q9UGF6 321 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 TUBD1Q9UJT1 453 aa16.53■□□□□ 0.24
SMC4-209ENST00000468653 DOCK7Q96N67 2140 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 CIB4A0PJX0 185 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 DHRS3O75911 302 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 IGHV1-2P23083 117 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 STEAP3Q658P3 488 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 PGAP1Q75T13 922 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 JAGN1Q8N5M9 183 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 CCDC54Q8NEL0 328 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 OR13C9Q8NGT0 318 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 SGK3Q96BR1 496 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 OCEL1Q9H607 264 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 PPP1R3EQ9H7J1 279 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 NOX3Q9HBY0 568 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 TMEM138Q9NPI0 162 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 PLSCR4Q9NRQ2 329 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 PROCRQ9UNN8 238 aa16.52■□□□□ 0.24
SMC4-209ENST00000468653 ISPDA4D126 451 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 SLC17A2O00624 439 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 IL2RAP01589 272 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 TMIGD3P0DMS9 266 aaPredicted RBP16.51■□□□□ 0.23
SMC4-209ENST00000468653 CCNOP22674 350 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 STOMP27105 288 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 CFPP27918 469 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 P2RY14Q15391 338 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 GSG1Q2KHT4 349 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 UNQ6494/PRO21346Q6UXR6 183 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 DTX3Q8N9I9 347 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 FOXRED1Q96CU9 486 aaPredicted RBP16.51■□□□□ 0.23
SMC4-209ENST00000468653 CGGBP1Q9UFW8 167 aaPredicted RBP16.51■□□□□ 0.23
SMC4-209ENST00000468653 FAM215AQ9Y5M1 114 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 ETV7Q9Y603 341 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 V9GYS6 101 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 LAMA5O15230 3695 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 LOC100509620A0A075B734 347 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 RAD51DO75771 328 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 TNFSF13O75888 250 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 LYZL6O75951 148 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 ERCC1P07992 297 aaPredicted RBP16.51■□□□□ 0.23
SMC4-209ENST00000468653 HOXD4P09016 255 aaPredicted RBP16.51■□□□□ 0.23
SMC4-209ENST00000468653 TDGF1P3P51864 188 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 GLYATL3Q5SZD4 288 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 OR2AE1Q8NHA4 323 aa16.51■□□□□ 0.23
SMC4-209ENST00000468653 ZCCHC14Q8WYQ9 949 aaKnown RBP16.51■□□□□ 0.23
SMC4-209ENST00000468653 FAM122AQ96E09 287 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms