RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 CDH10Q9Y6N8 788 aa20.41■□□□□ 0.86
PTCH1-210ENST00000468211 TRAV40A0A0B4J280 105 aa20.4■□□□□ 0.86
PTCH1-210ENST00000468211 MDFIC2A0A1B0GVS7 189 aa20.4■□□□□ 0.86
PTCH1-210ENST00000468211 CD300LBA8K4G0 201 aa20.4■□□□□ 0.86
PTCH1-210ENST00000468211 WDR25Q64LD2 544 aaPredicted RBP20.4■□□□□ 0.86
PTCH1-210ENST00000468211 C9orf139Q6ZV77 190 aa20.4■□□□□ 0.86
PTCH1-210ENST00000468211 MRPL21Q7Z2W9 205 aaKnown RBP20.4■□□□□ 0.86
PTCH1-210ENST00000468211 SPRYD4Q8WW59 207 aaPredicted RBP20.4■□□□□ 0.86
PTCH1-210ENST00000468211 NUDT16L1Q9BRJ7 211 aaKnown RBP20.4■□□□□ 0.86
PTCH1-210ENST00000468211 TAGLN3Q9UI15 199 aa20.4■□□□□ 0.86
PTCH1-210ENST00000468211 KCNG2Q9UJ96 466 aa20.4■□□□□ 0.86
PTCH1-210ENST00000468211 TMPRSS2O15393 492 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 WIPF1O43516 503 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 RNASE1P07998 156 aaKnown RBP20.39■□□□□ 0.85
PTCH1-210ENST00000468211 IRF2P14316 349 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 ZNF823P16415 610 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 OTX1P32242 354 aaPredicted RBP20.39■□□□□ 0.85
PTCH1-210ENST00000468211 HMGA2P52926 109 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 PPP1R8Q12972 351 aaKnown RBP20.39■□□□□ 0.85
PTCH1-210ENST00000468211 ZNF770Q6IQ21 691 aaPredicted RBP20.39■□□□□ 0.85
PTCH1-210ENST00000468211 DCDC5Q6ZRR9 648 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 CPLX4Q7Z7G2 160 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 DEFB107AQ8IZN7 70 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 FITM2Q8N6M3 262 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 PROKR2Q8NFJ6 384 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 OR4C15Q8NGM1 316 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 OR9Q1Q8NGQ5 310 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 CLN8Q9UBY8 286 aa20.39■□□□□ 0.85
PTCH1-210ENST00000468211 C22orf46C9J442 243 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 GASTP01350 101 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 ATP6V1B2P21281 511 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 PSMB10P40306 273 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 OR8G1Q15617 311 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 GLYATL3Q5SZD4 288 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 CYP2R1Q6VVX0 501 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 NLRC3Q7RTR2 1065 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 SLC37A3Q8NCC5 494 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 OR52L1Q8NGH7 329 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 OR11L1Q8NGX0 322 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 SPTSSAQ969W0 71 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 ERGIC1Q969X5 290 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 ZMAT3Q9HA38 289 aaKnown RBP20.38■□□□□ 0.85
PTCH1-210ENST00000468211 IL20Q9NYY1 176 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 CTSZQ9UBR2 303 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 COMMD3-BMI1R4GMX3 469 aa20.38■□□□□ 0.85
PTCH1-210ENST00000468211 CLDN34H7C241 214 aa20.37■□□□□ 0.85
PTCH1-210ENST00000468211 TNFRSF11BO00300 401 aa20.37■□□□□ 0.85
PTCH1-210ENST00000468211 GYS2P54840 703 aa20.37■□□□□ 0.85
PTCH1-210ENST00000468211 FGF12P61328 243 aa20.37■□□□□ 0.85
PTCH1-210ENST00000468211 SFRP4Q6FHJ7 346 aaPredicted RBP20.37■□□□□ 0.85
PTCH1-210ENST00000468211 BRD3OSQ6XYD6 125 aa20.37■□□□□ 0.85
PTCH1-210ENST00000468211 DCXRQ7Z4W1 244 aa20.37■□□□□ 0.85
PTCH1-210ENST00000468211 ZNF511Q8NB15 262 aa20.37■□□□□ 0.85
PTCH1-210ENST00000468211 OR2T4Q8NH00 348 aa20.37■□□□□ 0.85
PTCH1-210ENST00000468211 VNN3Q9NY84 501 aa20.37■□□□□ 0.85
PTCH1-210ENST00000468211 PHYHO14832 338 aa20.36■□□□□ 0.85
PTCH1-210ENST00000468211 KRT36O76013 467 aa20.36■□□□□ 0.85
PTCH1-210ENST00000468211 PTBP3O95758 552 aaKnown RBP20.36■□□□□ 0.85
PTCH1-210ENST00000468211 GYPBP06028 91 aa20.36■□□□□ 0.85
PTCH1-210ENST00000468211 SLC2A1P11166 492 aa20.36■□□□□ 0.85
PTCH1-210ENST00000468211 MTNR1AP48039 350 aa20.36■□□□□ 0.85
PTCH1-210ENST00000468211 BOLLQ8N9W6 283 aaKnown RBP20.36■□□□□ 0.85
PTCH1-210ENST00000468211 OR4Q3Q8NH05 313 aa20.36■□□□□ 0.85
PTCH1-210ENST00000468211 SLC25A28Q96A46 364 aa20.36■□□□□ 0.85
PTCH1-210ENST00000468211 ADAT1Q9BUB4 502 aaKnown RBP20.36■□□□□ 0.85
PTCH1-210ENST00000468211 RNF7Q9UBF6 113 aa20.36■□□□□ 0.85
PTCH1-210ENST00000468211 GGT3PA6NGU5 568 aa20.35■□□□□ 0.85
PTCH1-210ENST00000468211 CLUP10909 449 aa20.35■□□□□ 0.85
PTCH1-210ENST00000468211 PRKXP51817 358 aa20.35■□□□□ 0.85
PTCH1-210ENST00000468211 CRMP1Q14194 572 aa20.35■□□□□ 0.85
PTCH1-210ENST00000468211 RPL13AP3Q6NVV1 102 aa20.35■□□□□ 0.85
PTCH1-210ENST00000468211 SHISA2Q6UWI4 295 aa20.35■□□□□ 0.85
PTCH1-210ENST00000468211 ZNF826PQ6ZT77 177 aa20.35■□□□□ 0.85
PTCH1-210ENST00000468211 RASSF6Q6ZTQ3 369 aa20.35■□□□□ 0.85
PTCH1-210ENST00000468211 NMNAT2Q9BZQ4 307 aa20.35■□□□□ 0.85
PTCH1-210ENST00000468211 TRIM15Q9C019 465 aa20.35■□□□□ 0.85
PTCH1-210ENST00000468211 UNKLQ9H9P5 680 aaKnown RBP20.35■□□□□ 0.85
PTCH1-210ENST00000468211 FN3KRPQ9HA64 309 aa20.35■□□□□ 0.85
PTCH1-210ENST00000468211 TNFRSF13BO14836 293 aaPredicted RBP20.34■□□□□ 0.85
PTCH1-210ENST00000468211 SPARCP09486 303 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 MAGEA2P43356 314 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 PCK2Q16822 640 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 DEFB112Q30KQ8 113 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 DRAM2Q6UX65 266 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 C16orf89Q6UX73 402 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 PIGWQ7Z7B1 504 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 LNX2Q8N448 690 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 AQP11Q8NBQ7 271 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 SLAMF6Q96DU3 332 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 COPS4Q9BT78 406 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 TSSK6Q9BXA6 273 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 SLC22A4Q9H015 551 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 MMADHCQ9H3L0 296 aaPredicted RBP20.34■□□□□ 0.85
PTCH1-210ENST00000468211 TBC1D23Q9NUY8 699 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 ARL2BPQ9Y2Y0 163 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 N6AMT1Q9Y5N5 214 aa20.34■□□□□ 0.85
PTCH1-210ENST00000468211 TCRBV5S2A0A599 114 aa20.33■□□□□ 0.85
PTCH1-210ENST00000468211 C3orf80F5H4A9 247 aa20.33■□□□□ 0.85
PTCH1-210ENST00000468211 LGALS8O00214 317 aa20.33■□□□□ 0.85
PTCH1-210ENST00000468211 ATP8B1O43520 1251 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms