RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 DDOQ99489 341 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 SLC22A4Q9H015 551 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 OPA3Q9H6K4 179 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 MMP26Q9NRE1 261 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 MIOXQ9UGB7 285 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 INSIG2Q9Y5U4 225 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 AUP1Q9Y679 476 aa11.71□□□□□ -0.53
USP4-206ENST00000461553 A0A1B0GWJ7 208 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 GGT3PA6NGU5 568 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 ZNF205O95201 554 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 GYPBP06028 91 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 PSKH1P11801 424 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 SPI1P17947 270 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 OTX1P32242 354 aaPredicted RBP11.7□□□□□ -0.54
USP4-206ENST00000461553 CD200P41217 278 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 BLVRAP53004 296 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 SLC25A1P53007 311 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 GNB2P62879 340 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 SNAI3Q3KNW1 292 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 ZNF404Q494X3 552 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 BTNL3Q6UXE8 466 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 NAA40Q86UY6 237 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 KLBQ86Z14 1044 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 OR8B3Q8NGG8 313 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 OR2AE1Q8NHA4 323 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 FAM216AQ8WUB2 273 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 ERGIC1Q969X5 290 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 SLAMF6Q96DU3 332 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 PLEKHA8Q96JA3 519 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 OR8B2Q96RD0 313 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 NBEAL1Q6ZS30 2694 aa11.7□□□□□ -0.54
USP4-206ENST00000461553 CD300LBA8K4G0 201 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 H3BN98 237 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 TRAPPC2LH3BP13 241 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 FSTL3O95633 263 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 CST1P01037 141 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 GRB2P62993 217 aaKnown RBP11.69□□□□□ -0.54
USP4-206ENST00000461553 MS4A2Q01362 244 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 GLYATL3Q5SZD4 288 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 ZNF362Q5T0B9 420 aaPredicted RBP11.69□□□□□ -0.54
USP4-206ENST00000461553 PRAMEF6Q5VXH4 476 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 RBMS3Q6XE24 437 aaKnown RBP11.69□□□□□ -0.54
USP4-206ENST00000461553 ZNF511Q8NB15 262 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 OR6N2Q8NGY6 317 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 Q8TCH9 128 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 ZNRF4Q8WWF5 429 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 C22orf15Q8WYQ4 148 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 NEIL1Q96FI4 390 aaPredicted RBP11.69□□□□□ -0.54
USP4-206ENST00000461553 KCNJ15Q99712 375 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 TMEM246Q9BRR3 403 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 NMNAT2Q9BZQ4 307 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 C1orf21Q9H246 121 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 FN3KRPQ9HA64 309 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 NTN4Q9HB63 628 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 CMC2Q9NRP2 79 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 CENPMQ9NSP4 180 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 UFSP2Q9NUQ7 469 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 MRPL15Q9P015 296 aaKnown RBP11.69□□□□□ -0.54
USP4-206ENST00000461553 NUP50Q9UKX7 468 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 PPIAL4AQ9Y536 164 aa11.69□□□□□ -0.54
USP4-206ENST00000461553 ARRDC5A6NEK1 342 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 ZNF593O00488 134 aaPredicted RBP11.68□□□□□ -0.54
USP4-206ENST00000461553 GNGT2O14610 69 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 XRCC2O43543 280 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 FAM20BO75063 409 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 WNT2P09544 360 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 CLUP10909 449 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 SLC2A1P11166 492 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 PAICSP22234 425 aaKnown RBP11.68□□□□□ -0.54
USP4-206ENST00000461553 CA6P23280 308 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 HSD11B1P28845 292 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 GRK5P34947 590 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 SLC15A1P46059 708 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 PITPNBP48739 271 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 PRKXP51817 358 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 ZNF92Q03936 586 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 MAB21L1Q13394 359 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 EIF2B1Q14232 305 aaKnown RBP11.68□□□□□ -0.54
USP4-206ENST00000461553 PCK2Q16822 640 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 FAM201AQ5SY85 155 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 DCDC5Q6ZRR9 648 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 SPATC1Q76KD6 591 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 ERI1Q8IV48 349 aaKnown RBP11.68□□□□□ -0.54
USP4-206ENST00000461553 OR56B2PQ8NGI1 322 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 GIPC3Q8TF64 312 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 GCDHQ92947 438 aaPredicted RBP11.68□□□□□ -0.54
USP4-206ENST00000461553 OTULINQ96BN8 352 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 CLPTM1LQ96KA5 538 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 INTS14Q96SY0 518 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 NIPSNAP1Q9BPW8 284 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 TMEM165Q9HC07 324 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 N6AMT1Q9Y5N5 214 aa11.68□□□□□ -0.54
USP4-206ENST00000461553 IGHV2-70DA0A0C4DH43 119 aa11.67□□□□□ -0.54
USP4-206ENST00000461553 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.67□□□□□ -0.54
USP4-206ENST00000461553 DHRS12A0PJE2 317 aa11.67□□□□□ -0.54
USP4-206ENST00000461553 TBX1O43435 398 aa11.67□□□□□ -0.54
USP4-206ENST00000461553 GMDSO60547 372 aa11.67□□□□□ -0.54
USP4-206ENST00000461553 E2F6O75461 281 aa11.67□□□□□ -0.54
USP4-206ENST00000461553 ANXA2P07355 339 aaKnown RBP11.67□□□□□ -0.54
USP4-206ENST00000461553 T-ENOLP0DO92 83 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms