RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 PRSS38A1L453 326 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 MPC2O95563 127 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 EPHA2P29317 976 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 ARG2P78540 354 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 GPNMBQ14956 572 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 NTNG2Q96CW9 530 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 PKIBQ9C010 78 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 PARP11Q9NR21 331 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 CBLN4Q9NTU7 201 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 NECAP2Q9NVZ3 263 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 OLFM2O95897 454 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 CD46P15529 392 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 PITX1P78337 314 aaPredicted RBP12.1□□□□□ -0.47
USP40-208ENST00000450966 MRPS24Q96EL2 167 aaKnown RBP12.1□□□□□ -0.47
USP40-208ENST00000450966 ZNF430Q9H8G1 570 aaPredicted RBP12.1□□□□□ -0.47
USP40-208ENST00000450966 PLA2G10O15496 165 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 MSX1P28360 303 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 DCAF7P61962 342 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 TRA2BP62995 288 aaKnown RBP12.1□□□□□ -0.47
USP40-208ENST00000450966 SRYQ05066 204 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 GGTA1PQ4G0N0 100 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 Q6ZSR9 355 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 TMEM179BQ7Z7N9 219 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 CHST14Q8NCH0 376 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 ASB11Q8WXH4 323 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 ALKBH7Q9BT30 221 aaPredicted RBP12.1□□□□□ -0.47
USP40-208ENST00000450966 FAAP24Q9BTP7 215 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 MED20Q9H944 212 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 ACER3Q9NUN7 267 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 KCNK7Q9Y2U2 307 aa12.1□□□□□ -0.47
USP40-208ENST00000450966 RBFOX3A6NFN3 312 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 WDR1O75083 606 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 SCGB1C2P0DMR2 95 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 SUCLG1P53597 346 aaKnown RBP12.09□□□□□ -0.47
USP40-208ENST00000450966 PAX5Q02548 391 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 MZT1Q08AG7 82 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 CNN3Q15417 329 aaKnown RBP12.09□□□□□ -0.47
USP40-208ENST00000450966 LPAL2Q16609 132 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 C19orf47Q8N9M1 422 aaKnown RBP12.09□□□□□ -0.47
USP40-208ENST00000450966 TCTN2Q96GX1 697 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 UBTD1Q9HAC8 227 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 OPN4Q9UHM6 478 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 HS3ST2Q9Y278 367 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 CLDN1O95832 211 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 LINC00614P0C842 121 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 P2RY4P51582 365 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 PIGPP57054 158 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 TCTAP57738 103 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 RPL7L1Q6DKI1 246 aaKnown RBP12.09□□□□□ -0.47
USP40-208ENST00000450966 NHLRC1Q6VVB1 395 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 CPEB2Q7Z5Q1 589 aaKnown RBP12.09□□□□□ -0.47
USP40-208ENST00000450966 PTOV1Q86YD1 416 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 PINX1Q96BK5 328 aaKnown RBP12.09□□□□□ -0.47
USP40-208ENST00000450966 HINT2Q9BX68 163 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 KLK11Q9UBX7 282 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 F11P03951 625 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 TMEM128Q5BJH2 165 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 GLYATL3Q5SZD4 288 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 C1orf53Q5VUE5 145 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 OR7E24Q6IFN5 339 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 PRSS54Q6PEW0 395 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 ABI3BPQ7Z7G0 1075 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 PPP1R35Q8TAP8 253 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 TMEFF2Q9UIK5 374 aaPredicted RBP12.09□□□□□ -0.47
USP40-208ENST00000450966 CYB5R3P00387 301 aaPredicted RBP12.09□□□□□ -0.47
USP40-208ENST00000450966 OR5G3P0C626 314 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 ATP1B3P54709 279 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 XKR7Q5GH72 579 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 SH2D5Q6ZV89 423 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 PRR22Q8IZ63 422 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 PDLIM5Q96HC4 596 aaKnown RBP12.09□□□□□ -0.47
USP40-208ENST00000450966 FAM71F1Q96KD3 344 aaPredicted RBP12.09□□□□□ -0.47
USP40-208ENST00000450966 RSG1Q9BU20 258 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 ALG12Q9BV10 488 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 NAT8Q9UHE5 227 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 ITGB4P16144 1822 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 TRAV27A0A087WT01 109 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 ADAP1O75689 374 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 RHBDL1O75783 438 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 NRASP01111 189 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 HRASP01112 189 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 KRASP01116 189 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 NID1P14543 1247 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 HFEQ30201 348 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 ANKRD34AQ69YU3 496 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 ESPNLQ6ZVH7 1005 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 TAS1R1Q7RTX1 841 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 NUDT11Q96G61 164 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 RAB33BQ9H082 229 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 ASCL3Q9NQ33 180 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 FLVCR1Q9Y5Y0 555 aa12.09□□□□□ -0.47
USP40-208ENST00000450966 IGF2P01344 180 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 FOXK2Q01167 660 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 DEFB133Q30KQ1 61 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 SYS1Q8N2H4 156 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 VN1R17PQ8TDU5 208 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 SPTSSAQ969W0 71 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 CFHR5Q9BXR6 569 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 OR10A2Q9H208 303 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 SLC25A19Q9HC21 320 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms