RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 C1QTNF12Q5T7M4 302 aa12.65□□□□□ -0.38
TNF-208ENST00000449264 ZNF704Q6ZNC4 412 aaPredicted RBP12.65□□□□□ -0.38
TNF-208ENST00000449264 SSX8Q7RTT4 187 aa12.65□□□□□ -0.38
TNF-208ENST00000449264 OR51A4Q8NGJ6 313 aa12.65□□□□□ -0.38
TNF-208ENST00000449264 TSEN15Q8WW01 171 aaKnown RBP12.65□□□□□ -0.38
TNF-208ENST00000449264 RPL3LQ92901 407 aaKnown RBP12.65□□□□□ -0.38
TNF-208ENST00000449264 APOBEC3DQ96AK3 386 aaPredicted RBP12.65□□□□□ -0.38
TNF-208ENST00000449264 FAM71F1Q96KD3 344 aaPredicted RBP12.65□□□□□ -0.38
TNF-208ENST00000449264 CHCHD6Q9BRQ6 235 aa12.65□□□□□ -0.38
TNF-208ENST00000449264 GPR84Q9NQS5 396 aa12.65□□□□□ -0.38
TNF-208ENST00000449264 EIF3KQ9UBQ5 218 aaKnown RBP12.65□□□□□ -0.38
TNF-208ENST00000449264 STUB1Q9UNE7 303 aa12.65□□□□□ -0.38
TNF-208ENST00000449264 A0A1B0GVI7 797 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 ACOD1A6NK06 481 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 H3BSA7 217 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 SMPD2O60906 423 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 RGS9O75916 674 aaPredicted RBP12.64□□□□□ -0.39
TNF-208ENST00000449264 CRYAAP02489 173 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 CD40P25942 277 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 MAGEB1P43366 347 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 PRSS12P56730 875 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 LSM3P62310 102 aaKnown RBP12.64□□□□□ -0.39
TNF-208ENST00000449264 FABP5Q01469 135 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 C3orf36Q3SXR2 165 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 YIF1BQ5BJH7 314 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 SPATA46Q5T0L3 261 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 TMEM108Q6UXF1 575 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 REEP6Q96HR9 211 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 OR14A2Q96R54 314 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 SOX7Q9BT81 388 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 NGBQ9NPG2 151 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 PTTG3PQ9NZH4 202 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 SYT7O43581 403 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 AIREO43918 545 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 NOL3O60936 208 aaKnown RBP12.64□□□□□ -0.39
TNF-208ENST00000449264 GPX5O75715 221 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 ATE1O95260 518 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 CD1AP06126 327 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 OCM2P0CE71 109 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 ZNF35P13682 527 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 CD53P19397 219 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 ACHEP22303 614 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 SOX2P48431 317 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 RPS11P62280 158 aaKnown RBP eCLIP12.64□□□□□ -0.39
TNF-208ENST00000449264 TIMM50Q3ZCQ8 353 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 TMEM244Q5VVB8 128 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 COLCA1Q6ZS62 124 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 MS4A15Q8N5U1 240 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 TRMT61AQ96FX7 289 aaKnown RBP12.64□□□□□ -0.39
TNF-208ENST00000449264 RADILQ96JH8 1075 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 LYZL4Q96KX0 146 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 POFUT1Q9H488 388 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 ENPP5Q9UJA9 477 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 HHLA2Q9UM44 414 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 STARD10Q9Y365 291 aa12.64□□□□□ -0.39
TNF-208ENST00000449264 A0A0U1RQV5 110 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 ATP6V1G2-DDX39BF2Z307 99 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 C19orf84I3L1E1 186 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 GABRPO00591 440 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 ABCD4O14678 606 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 XRCC2O43543 280 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 HLA-DPB1P04440 258 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 CRYBB2P43320 205 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 ERVS71-1P61550 626 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 BSPH1Q075Z2 132 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 MALLQ13021 153 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 TRAM1Q15629 374 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 SLC16A12Q6ZSM3 486 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 ANKRD13BQ86YJ7 626 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 OR13C3Q8NGS6 347 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 GPR148Q8TDV2 347 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 SGK3Q96BR1 496 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 TBCCD1Q9NVR7 557 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 SSR3Q9UNL2 185 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 DHDHQ9UQ10 334 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 CEPT1Q9Y6K0 416 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 COL12A1Q99715 3063 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 ROS1P08922 2347 aa12.63□□□□□ -0.39
TNF-208ENST00000449264 A0A1B0GTI1 187 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 SMIM31A0A1B0GVY4 71 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 A0A1W2PPK0 400 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 J3QKU1 62 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 SERPINA3P01011 423 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 ISG15P05161 165 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 PTAFRP25105 342 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 UCP2P55851 309 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 PPP1CBP62140 327 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 ZNF92Q03936 586 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 SRSF1Q07955 248 aaKnown RBP eCLIP12.62□□□□□ -0.39
TNF-208ENST00000449264 SNTB2Q13425 540 aaKnown RBP12.62□□□□□ -0.39
TNF-208ENST00000449264 HLXQ14774 488 aaPredicted RBP12.62□□□□□ -0.39
TNF-208ENST00000449264 Q499Y3 187 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 ACSM3Q53FZ2 586 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 C22orf42Q6IC83 251 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 TMEM91Q6ZNR0 172 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 OR1J1Q8NGS3 322 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 CENPOQ9BU64 300 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 RBM38Q9H0Z9 239 aaKnown RBP12.62□□□□□ -0.39
TNF-208ENST00000449264 RNF167Q9H6Y7 350 aa12.62□□□□□ -0.39
TNF-208ENST00000449264 BATF3Q9NR55 127 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms