RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ARMCX4Q5H9R4 360 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 ELFN2Q5R3F8 820 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 TIMM23BQ5SRD1 257 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 DEGS2Q6QHC5 323 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 VASH1Q7L8A9 365 aaPredicted RBP10.49□□□□□ -0.73
PTPRF-208ENST00000437607 KCTD20Q7Z5Y7 419 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 KLBQ86Z14 1044 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 SKA3Q8IX90 412 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 GATAD2BQ8WXI9 593 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 TMEM158Q8WZ71 300 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 FBXO17Q96EF6 278 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 PELI1Q96FA3 418 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 MGLLQ99685 303 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF649Q9BS31 505 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 CACNG6Q9BXT2 260 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 OR2H1Q9GZK4 316 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 ELOVL3Q9HB03 270 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 BARX1Q9HBU1 254 aaPredicted RBP10.49□□□□□ -0.73
PTPRF-208ENST00000437607 OBP2BQ9NPH6 170 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 DDX28Q9NUL7 540 aaKnown RBP10.49□□□□□ -0.73
PTPRF-208ENST00000437607 SLCO1C1Q9NYB5 712 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 MRM2Q9UI43 246 aaKnown RBP10.49□□□□□ -0.73
PTPRF-208ENST00000437607 ATPIF1Q9UII2 106 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 GTF2A1LQ9UNN4 478 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 AMDHD2Q9Y303 409 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 TIMM10BQ9Y5J6 103 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 ARPC4-TTLL3A0A0A6YYG9 625 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 PNMA8CA0A1B0GUJ8 204 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 OR5H1A6NKK0 313 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 MAGEB4O15481 346 aaPredicted RBP10.48□□□□□ -0.73
PTPRF-208ENST00000437607 NOL3O60936 208 aaKnown RBP10.48□□□□□ -0.73
PTPRF-208ENST00000437607 RPP14O95059 124 aaKnown RBP10.48□□□□□ -0.73
PTPRF-208ENST00000437607 TFAP2AP05549 437 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 FAM157CP0CG43 387 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 HOXB1P14653 301 aaPredicted RBP10.48□□□□□ -0.73
PTPRF-208ENST00000437607 TTKP33981 857 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 ALDH3B2P48448 385 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 GP2P55259 537 aaKnown RBP10.48□□□□□ -0.73
PTPRF-208ENST00000437607 PSMA6P60900 246 aaKnown RBP10.48□□□□□ -0.73
PTPRF-208ENST00000437607 TUBA1BP68363 451 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 ECH1Q13011 328 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 GABRA6Q16445 453 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 TSTQ16762 297 aaKnown RBP10.48□□□□□ -0.73
PTPRF-208ENST00000437607 SYT6Q5T7P8 510 aaPredicted RBP10.48□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF774Q6NX45 483 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 TUBA1AQ71U36 451 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 EGFL6Q8IUX8 553 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 ALDH16A1Q8IZ83 802 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF283Q8N7M2 679 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 OR10S1Q8NGN2 331 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 SPTSSAQ969W0 71 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 COG8Q96MW5 612 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 OPALINQ96PE5 141 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 COQ7Q99807 217 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 WNT5BQ9H1J7 359 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 MOB1AQ9H8S9 216 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 ISG20L2Q9H9L3 353 aaKnown RBP10.48□□□□□ -0.73
PTPRF-208ENST00000437607 MOV10Q9HCE1 1003 aaKnown RBP10.48□□□□□ -0.73
PTPRF-208ENST00000437607 ISYNA1Q9NPH2 558 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 PNRC2Q9NPJ4 139 aaKnown RBP10.48□□□□□ -0.73
PTPRF-208ENST00000437607 SLC17A5Q9NRA2 495 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 FAIMQ9NVQ4 179 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 FBXL3Q9UKT7 428 aa10.48□□□□□ -0.73
PTPRF-208ENST00000437607 TENM1Q9UKZ4 2725 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 IQCMA0A1B0GVH7 501 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 OR6C6A6NF89 314 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 LOC110117498-PIK3R3F6TDL0 507 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 CCRL2O00421 344 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 F12P00748 615 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-208ENST00000437607 APOC1P02654 83 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 MMP7P09237 267 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-208ENST00000437607 PATE4P0C8F1 98 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 PSMB10P40306 273 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 SLC6A9P48067 706 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 TGM4P49221 684 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 CX3CR1P49238 355 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 HIST1H3AP68431 136 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 PSG4Q00888 419 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 LOXL1Q08397 574 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-208ENST00000437607 ACSM1Q08AH1 577 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 CDK5R1Q15078 307 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 KRTAP24-1Q3LI83 254 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 CCDC58Q4VC31 144 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 CCDC92Q53HC0 331 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-208ENST00000437607 PABPC1L2AQ5JQF8 200 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF684Q5T5D7 378 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 HIST2H3PS2Q5TEC6 136 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 AGAP6Q5VW22 663 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 LIPNQ5VXI9 398 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 ARL9Q6T311 187 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 HIST2H3AQ71DI3 136 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 RHOUQ7L0Q8 258 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 MDP1Q86V88 176 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 SATL1Q86VE3 508 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 P2RY8Q86VZ1 359 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 PIAS4Q8N2W9 510 aaPredicted RBP10.47□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF525Q8N782 197 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 ZFP41Q8N8Y5 198 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF485Q8NCK3 441 aa10.47□□□□□ -0.73
PTPRF-208ENST00000437607 OR1F12Q8NHA8 337 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms