RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SHARPINQ9H0F6 387 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 SHISA8B8ZZ34 492 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 IGKV1D-16P01601 117 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 MT-ND4LP03901 98 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 DHPSP49366 369 aaPredicted RBP10.76□□□□□ -0.69
HMGB1-206ENST00000405805 CD226Q15762 336 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 SKA3Q8IX90 412 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 HSD17B11Q8NBQ5 300 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 TSTD1Q8NFU3 115 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 OR51A2Q8NGJ7 313 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 KISS1RQ969F8 398 aaPredicted RBP10.76□□□□□ -0.69
HMGB1-206ENST00000405805 LOC100289279A0A1B0GTE1 492 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 MED19A0JLT2 244 aaPredicted RBP10.76□□□□□ -0.69
HMGB1-206ENST00000405805 OR6C76A6NM76 312 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 VSIG10L2P0DP72 767 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 GFERP55789 205 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 TOMM34Q15785 309 aaPredicted RBP10.76□□□□□ -0.69
HMGB1-206ENST00000405805 FAM69BQ5VUD6 431 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 FCRL6Q6DN72 434 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 DYRK2Q92630 601 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 SLC25A38Q96DW6 304 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF587Q96SQ5 575 aaPredicted RBP10.76□□□□□ -0.69
HMGB1-206ENST00000405805 KPTNQ9Y664 436 aa10.76□□□□□ -0.69
HMGB1-206ENST00000405805 FNDC1Q4ZHG4 1894 aaPredicted RBP10.75□□□□□ -0.69
HMGB1-206ENST00000405805 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.75□□□□□ -0.69
HMGB1-206ENST00000405805 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.75□□□□□ -0.69
HMGB1-206ENST00000405805 STK17BO94768 372 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 CSNK2A1P68400 391 aaPredicted RBP10.75□□□□□ -0.69
HMGB1-206ENST00000405805 FMODQ06828 376 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 PMPCAQ10713 525 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 C19orf47Q8N9M1 422 aaKnown RBP10.75□□□□□ -0.69
HMGB1-206ENST00000405805 PLPP5Q8NEB5 264 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 CSNK2A3Q8NEV1 391 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 BAHD1Q8TBE0 780 aaPredicted RBP10.75□□□□□ -0.69
HMGB1-206ENST00000405805 TMEM68Q96MH6 324 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 CMTM3Q96MX0 182 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 LMF2Q9BU23 707 aaKnown RBP10.75□□□□□ -0.69
HMGB1-206ENST00000405805 KIF26BQ2KJY2 2108 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 A0A087WUJ7 227 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 ALOX12BO75342 701 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 GLSO94925 669 aaPredicted RBP10.75□□□□□ -0.69
HMGB1-206ENST00000405805 HOXB1P14653 301 aaPredicted RBP10.75□□□□□ -0.69
HMGB1-206ENST00000405805 GNB3P16520 340 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 DLX2Q07687 328 aaPredicted RBP10.75□□□□□ -0.69
HMGB1-206ENST00000405805 C2orf68Q2NKX9 166 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 OVCH2Q7RTZ1 564 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 OR6K3Q8NGY3 331 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 DNAJB11Q9UBS4 358 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 CD207Q9UJ71 328 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 A0A0G2JK05 382 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 CXorf51AA0A1B0GTR3 108 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF729A6NN14 1252 aaPredicted RBP10.75□□□□□ -0.69
HMGB1-206ENST00000405805 RNASEK-C17orf49H0YIS7 233 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 ICOSLGO75144 302 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 PET100P0DJ07 73 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 PRF1P14222 555 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 COL9A1P20849 921 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 PLXNA3P51805 1871 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 CLDN6P56747 220 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 COL4A6Q14031 1691 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 THNSL2Q86YJ6 484 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF321PQ8N8H1 164 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 NECAP1Q8NC96 275 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 OR5M9Q8NGP3 310 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 DCBLD2Q96PD2 775 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 AMELYQ99218 206 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 NOTCH4Q99466 2003 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 ESRP2Q9H6T0 727 aaKnown RBP10.75□□□□□ -0.69
HMGB1-206ENST00000405805 METTL7AQ9H8H3 244 aa10.75□□□□□ -0.69
HMGB1-206ENST00000405805 ERCC1P07992 297 aaPredicted RBP10.74□□□□□ -0.69
HMGB1-206ENST00000405805 MGMTP16455 207 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 SERPINA2P20848 420 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 CLRN1P58418 232 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 MCEMP1Q8IX19 187 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 OR4D6Q8NGJ1 314 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 RAB39BQ96DA2 213 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 MRGPRX1Q96LB2 322 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 CDC6Q99741 560 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 GGACTQ9BVM4 153 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 OPN4Q9UHM6 478 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 B3GALT1Q9Y5Z6 326 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 PTPRZ1P23471 2315 aaPredicted RBP10.74□□□□□ -0.69
HMGB1-206ENST00000405805 CACNA1GO43497 2377 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 LOC107986453A0A1B0GWG9 222 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 GAAP10253 952 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 ATP1B3P54709 279 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 TAS2R60P59551 318 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 ACSM1Q08AH1 577 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 FAM199XQ6PEV8 388 aaPredicted RBP10.74□□□□□ -0.69
HMGB1-206ENST00000405805 DNM1P34Q6PK57 102 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 Q6ZRG5 221 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 ANGPTL5Q86XS5 388 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 GALNT16Q8N428 558 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 OR4K17Q8NGC6 315 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 ZNF596Q8TC21 504 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 UBL7Q96S82 380 aaPredicted RBP10.74□□□□□ -0.69
HMGB1-206ENST00000405805 LYRM4Q9HD34 91 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 PISDQ9UG56 409 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 PLXND1Q9Y4D7 1925 aa10.74□□□□□ -0.69
HMGB1-206ENST00000405805 ANKRD20A5PA0PJZ0 165 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms