RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ATP6V1G2-DDX39BF2Z307 99 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 XRCC2O43543 280 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 GPRIN2O60269 458 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 SMPD2O60906 423 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 CD3EP07766 207 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 UBCP0CG48 685 aaKnown RBP15.6■□□□□ 0.09
SDC1-203ENST00000403076 ANOS1P23352 680 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 PPP1CBP62140 327 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 SPOCK1Q08629 439 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 BLMHQ13867 455 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 GLYATL3Q5SZD4 288 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 RDH10Q8IZV5 341 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 OR1J1Q8NGS3 322 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 OR2AE1Q8NHA4 323 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 FAM222BQ8WU58 562 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 TMEM203Q969S6 136 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 BCL2L14Q9BZR8 327 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 PTTG3PQ9NZH4 202 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 DOPEY1Q5JWR5 2465 aa15.6■□□□□ 0.09
SDC1-203ENST00000403076 A0A1B0GVI7 797 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 J3QW42 95 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 CD1AP06126 327 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 CD36P16671 472 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 NR4A1P22736 598 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 SNTB2Q13425 540 aaKnown RBP15.59■□□□□ 0.09
SDC1-203ENST00000403076 SSX1Q16384 188 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 SPATA46Q5T0L3 261 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 RFPL4BQ6ZWI9 263 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 OR13F1Q8NGS4 319 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 RPS4Y2Q8TD47 263 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 AKAP1Q92667 903 aaKnown RBP eCLIP15.59■□□□□ 0.093e-10■■■■□ 22.1
SDC1-203ENST00000403076 SGK3Q96BR1 496 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 REEP6Q96HR9 211 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 FAM71F1Q96KD3 344 aaPredicted RBP15.59■□□□□ 0.09
SDC1-203ENST00000403076 GPR84Q9NQS5 396 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 POU2F3Q9UKI9 436 aa15.59■□□□□ 0.09
SDC1-203ENST00000403076 ANKHD1Q8IWZ3 2542 aaKnown RBP15.59■□□□□ 0.09
SDC1-203ENST00000403076 USP9XQ93008 2570 aaPredicted RBP15.59■□□□□ 0.09
SDC1-203ENST00000403076 FLNCQ14315 2725 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 A0A0U1RQV5 110 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 LOC107986453A0A1B0GWG9 222 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 A1L4Q6 167 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 CLEC18AA5D8T8 446 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 SYT7O43581 403 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 ACHEP22303 614 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 RPS25P62851 125 aaKnown RBP15.58■□□□□ 0.09
SDC1-203ENST00000403076 CLEC18BQ6UXF7 455 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 MRPL21Q7Z2W9 205 aaKnown RBP15.58■□□□□ 0.09
SDC1-203ENST00000403076 MS4A15Q8N5U1 240 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 CLEC18CQ8NCF0 446 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 PIK3IP1Q96FE7 263 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 PGLYRP3Q96LB9 341 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 RGCCQ9H4X1 137 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 NDUFB11Q9NX14 153 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 HHLA2Q9UM44 414 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 ATP23Q9Y6H3 246 aa15.58■□□□□ 0.09
SDC1-203ENST00000403076 UBR5O95071 2799 aaPredicted RBP15.58■□□□□ 0.08
SDC1-203ENST00000403076 ICMTO60725 284 aa15.58■□□□□ 0.08
SDC1-203ENST00000403076 IGFBP2P18065 325 aa15.58■□□□□ 0.08
SDC1-203ENST00000403076 CD53P19397 219 aa15.58■□□□□ 0.08
SDC1-203ENST00000403076 CFL1P23528 166 aaKnown RBP15.58■□□□□ 0.08
SDC1-203ENST00000403076 PSMA1P25786 263 aaKnown RBP15.58■□□□□ 0.08
SDC1-203ENST00000403076 TTKP33981 857 aa15.58■□□□□ 0.08
SDC1-203ENST00000403076 ERVS71-1P61550 626 aa15.58■□□□□ 0.08
SDC1-203ENST00000403076 ZNF92Q03936 586 aa15.58■□□□□ 0.08
SDC1-203ENST00000403076 VHLLQ6RSH7 139 aa15.58■□□□□ 0.08
SDC1-203ENST00000403076 SATL1Q86VE3 508 aa15.58■□□□□ 0.08
SDC1-203ENST00000403076 C1orf174Q8IYL3 243 aa15.58■□□□□ 0.08
SDC1-203ENST00000403076 SLC25A40Q8TBP6 338 aa15.58■□□□□ 0.08
SDC1-203ENST00000403076 TSEN15Q8WW01 171 aaKnown RBP15.58■□□□□ 0.08
SDC1-203ENST00000403076 ZNF391Q9UJN7 358 aa15.58■□□□□ 0.08
SDC1-203ENST00000403076 CADP27708 2225 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 MTRF1O75570 445 aaKnown RBP15.57■□□□□ 0.08
SDC1-203ENST00000403076 SERPINA3P01011 423 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 ISG15P05161 165 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 GABRA5P31644 462 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 RPS23P62266 143 aaKnown RBP15.57■□□□□ 0.08
SDC1-203ENST00000403076 HLXQ14774 488 aaPredicted RBP15.57■□□□□ 0.08
SDC1-203ENST00000403076 TRAM1Q15629 374 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 YIF1BQ5BJH7 314 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 ADAM5Q6NVV9 412 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 PGAP1Q75T13 922 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 DOK3Q7L591 496 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 OR13C5Q8NGS8 318 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 OR10AC1Q8NH08 325 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 GPR148Q8TDV2 347 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 OR2J1Q9GZK6 312 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 POFUT1Q9H488 388 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 EXOSC4Q9NPD3 245 aaKnown RBP15.57■□□□□ 0.08
SDC1-203ENST00000403076 RNF115Q9Y4L5 304 aa15.57■□□□□ 0.08
SDC1-203ENST00000403076 A0A1B0GTI1 187 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 DEFB108AA8MXU0 73 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 HLA-DPB1P04440 258 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 TUBG1P23258 451 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 GCH1P30793 250 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 TGFBR2P37173 567 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 SOX2P48431 317 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 GK2Q14410 553 aaPredicted RBP15.56■□□□□ 0.08
SDC1-203ENST00000403076 ZNF718Q3SXZ3 478 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 RGS7BPQ6MZT1 257 aaPredicted RBP15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms