RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 LY6G5CQ5SRR4 150 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 TMEM147Q9BVK8 224 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 CHRNA10Q9GZZ6 450 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 PRDM7Q9NQW5 492 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 GKN1Q9NS71 199 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 PIAS3Q9Y6X2 628 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 CASP8AP2Q9UKL3 1982 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 OR4E1P0C645 316 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 SNRPEP62304 92 aaKnown RBP12.28□□□□□ -0.44
USP49-203ENST00000394253 PRSS42Q7Z5A4 293 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 IL24Q13007 206 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 CBLL1Q75N03 491 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 CALHM3Q86XJ0 350 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 LKAAEAR1Q8TD35 194 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 LRP3O75074 770 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 MELTFP08582 738 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 RPL30P62888 115 aaKnown RBP12.28□□□□□ -0.44
USP49-203ENST00000394253 C2orf50Q96LR7 162 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 ANXA10Q9UJ72 324 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 RTN4IP1Q8WWV3 396 aaPredicted RBP12.28□□□□□ -0.44
USP49-203ENST00000394253 ZNF778Q96MU6 729 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 DDX60Q8IY21 1712 aaKnown RBP12.28□□□□□ -0.44
USP49-203ENST00000394253 ARNTLO00327 626 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 INHBCP55103 352 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 FAM74A3Q4VXF1 159 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 HES3Q5TGS1 186 aa12.28□□□□□ -0.44
USP49-203ENST00000394253 LIMK1P53667 647 aa12.27□□□□□ -0.44
USP49-203ENST00000394253 CTBSQ01459 385 aa12.27□□□□□ -0.44
USP49-203ENST00000394253 DMAC2Q9NW81 257 aa12.27□□□□□ -0.44
USP49-203ENST00000394253 A0A087WV62 115 aa12.27□□□□□ -0.44
USP49-203ENST00000394253 FRS3O43559 492 aa12.27□□□□□ -0.44
USP49-203ENST00000394253 HAND1O96004 215 aa12.27□□□□□ -0.44
USP49-203ENST00000394253 HNRNPA1L2Q32P51 320 aaKnown RBP12.27□□□□□ -0.44
USP49-203ENST00000394253 EMC4Q5J8M3 183 aa12.27□□□□□ -0.44
USP49-203ENST00000394253 OR2D2Q9H210 308 aa12.27□□□□□ -0.44
USP49-203ENST00000394253 NARFLQ9H6Q4 476 aa12.27□□□□□ -0.44
USP49-203ENST00000394253 SLC45A2Q9UMX9 530 aa12.27□□□□□ -0.44
USP49-203ENST00000394253 NWD2Q9ULI1 1742 aa12.27□□□□□ -0.44
USP49-203ENST00000394253 MED1Q15648 1581 aaPredicted RBP12.27□□□□□ -0.45
USP49-203ENST00000394253 LNP1A1A4G5 178 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 ACAA1P09110 424 aaPredicted RBP12.27□□□□□ -0.45
USP49-203ENST00000394253 RAD52P43351 418 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 CLDN17P56750 224 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 DHRS4L2Q6PKH6 230 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 UMODL1-AS1Q8N2C9 162 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 NMNAT3Q96T66 252 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 GPR45Q9Y5Y3 372 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 CD40P25942 277 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 SHC1P29353 583 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 FAM71E1Q6IPT2 247 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 GPR150Q8NGU9 434 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 C3orf30Q96M34 536 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 TMEM129A0AVI4 362 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 ERVFRD-1P60508 538 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 TMEM176BQ3YBM2 270 aaPredicted RBP12.27□□□□□ -0.45
USP49-203ENST00000394253 MUC15Q8N387 334 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 HSFX1Q9UBD0 423 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 WSB1Q9Y6I7 421 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 GBF1Q92538 1859 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 SLIT3O75094 1523 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 CDK2AP1O14519 115 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 SOD1P00441 154 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 HIST1H1TP22492 207 aaPredicted RBP12.27□□□□□ -0.45
USP49-203ENST00000394253 PCP4P48539 62 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 PQLC3Q8N755 202 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 ZNF583Q96ND8 569 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 ADGRL4Q9HBW9 690 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 G3V2L1 256 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 OR1L4Q8NGR5 311 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 MOB3AQ96BX8 217 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 RBM14Q96PK6 669 aaKnown RBP12.27□□□□□ -0.45
USP49-203ENST00000394253 SLC25A33Q9BSK2 321 aa12.27□□□□□ -0.45
USP49-203ENST00000394253 OR2J2O76002 312 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 SRP9P49458 86 aaKnown RBP12.26□□□□□ -0.45
USP49-203ENST00000394253 MEX3DQ86XN8 651 aaKnown RBP12.26□□□□□ -0.45
USP49-203ENST00000394253 SPATA31D1Q6ZQQ2 1576 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 DOK2O60496 412 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 GPX3P22352 226 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 SMIM21Q3B7S5 101 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 TXNRD3NBQ6F5E7 133 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 GPR137Q96N19 417 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 FZD8Q9H461 694 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 SLC17A4Q9Y2C5 497 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 PAM16Q9Y3D7 125 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 ZC3H12DA2A288 527 aaKnown RBP12.26□□□□□ -0.45
USP49-203ENST00000394253 MFNGO00587 321 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 LDB3O75112 727 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 TSACCQ96A04 125 aaPredicted RBP12.26□□□□□ -0.45
USP49-203ENST00000394253 NDRG4Q9ULP0 352 aaKnown RBP12.26□□□□□ -0.45
USP49-203ENST00000394253 SOWAHBA6NEL2 793 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 OR4C46A6NHA9 309 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 EDN3P14138 238 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 SDC1P18827 310 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 HOXA4Q00056 320 aaPredicted RBP12.26□□□□□ -0.45
USP49-203ENST00000394253 ZNF816Q0VGE8 651 aaPredicted RBP12.26□□□□□ -0.45
USP49-203ENST00000394253 NUDT10Q8NFP7 164 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 NUDT11Q96G61 164 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 SNX22Q96L94 193 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 RNF2Q99496 336 aa12.26□□□□□ -0.45
USP49-203ENST00000394253 SLC17A9Q9BYT1 436 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms