RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 NTSR1P30989 418 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 DCTP40126 519 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 GDF5P43026 501 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 PRRX1P54821 245 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TRA2BP62995 288 aaKnown RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 LTB4RQ15722 352 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 SMN1Q16637 294 aaKnown RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TAC4Q86UU9 113 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TEX26Q8N6G2 289 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 KISS1RQ969F8 398 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 OR10C1Q96KK4 312 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 ACTR3CQ9C0K3 210 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 WDR76Q9H967 626 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 RCC2Q9P258 522 aaKnown RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 AMMECR1Q9Y4X0 333 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TRAPPC1Q9Y5R8 145 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 MYH1P12882 1939 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM269A0A1B0GVZ9 245 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 OR52A4PA6NMU1 304 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 F8WEM9 126 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 GLI4P10075 376 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 PBX1P40424 430 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF140P52738 457 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 DCDP81605 110 aaKnown RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 CEACAM21Q3KPI0 293 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 SLC25A30Q5SVS4 291 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 FNDC7Q5VTL7 733 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM182Q6ZP80 229 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 CTU1Q7Z7A3 348 aaKnown RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM139Q8IV31 216 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 FNDC8Q8TC99 324 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 SCARB1Q8WTV0 552 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 C19orf43Q9BQ61 176 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 MCOLN1Q9GZU1 580 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM9BQ9NQ34 198 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 SLC22A20A6NK97 555 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 M0QYG6 137 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 IVDP26440 423 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TEX44Q53QW1 395 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 RTP2Q5QGT7 225 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 SPATA46Q5T0L3 261 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 C10orf62Q5T681 223 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 FAM74A4Q5TZK3 123 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 LIPNQ5VXI9 398 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 OPN5Q6U736 354 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 SLC36A1Q7Z2H8 476 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 BAALCQ8WXS3 180 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 RAB3CQ96E17 227 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 HSH2DQ96JZ2 352 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 OR2B2Q9GZK3 357 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 GDF2Q9UK05 429 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 CYSLTR1Q9Y271 337 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 INS-IGF2F8WCM5 200 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 B4GALT5O43286 388 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 MT-CO3P00414 261 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 INSP01308 110 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 FPR1P21462 350 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 CLDN2P57739 230 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 RAB15P59190 212 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 PDZK1IP1Q13113 114 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 MEF2DQ14814 521 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 LCN15Q6UWW0 184 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 SYT9Q86SS6 491 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 GLCCI1Q86VQ1 547 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 DNASE2BQ8WZ79 361 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 ERGIC1Q969X5 290 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 C12orf42Q96LP6 360 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 PRELID3AQ96N28 172 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF317Q96PQ6 595 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 NOCTQ9UK39 431 aaKnown RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 SLC45A2Q9UMX9 530 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 GABRDO14764 452 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 PDE6DO43924 150 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 IGHV3-13P01766 116 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 IGHV3-7P01780 117 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 UNGP13051 313 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF133P52736 654 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 LCN6P62502 163 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 BTG2P78543 158 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF763Q0D2J5 394 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 VMA21Q3ZAQ7 101 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 CD276Q5ZPR3 534 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 LAMTOR1Q6IAA8 161 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 ACSM5Q6NUN0 579 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 OR13D1Q8NGV5 346 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 LKAAEAR1Q8TD35 194 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 PIGTQ969N2 578 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 FGFBP2Q9BYJ0 223 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF552Q9H707 407 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 SEMA4GQ9NTN9 838 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 DNAJB9Q9UBS3 223 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 PNPLA6Q8IY17 1366 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 A0A1W2PNR3 127 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 PGPA6NDG6 321 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 NRG2O14511 850 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 ATP1B1P05026 303 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 SLURP2P0DP57 97 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 FCGR2BP31994 310 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 FCGR2CP31995 323 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 OLIG2Q13516 323 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms