RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 PGAM5Q96HS1 289 aa18.98■□□□□ 0.63
SHMT1-203ENST00000354098 TUBG2Q9NRH3 451 aa18.98■□□□□ 0.63
SHMT1-203ENST00000354098 PAK1IP1Q9NWT1 392 aaPredicted RBP18.98■□□□□ 0.63
SHMT1-203ENST00000354098 PDZD2O15018 2839 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 J3QLW9 94 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 IGHV3-13P01766 116 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 ZNF19P17023 458 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 C21orf33P30042 268 aaPredicted RBP18.97■□□□□ 0.63
SHMT1-203ENST00000354098 PSMB10P40306 273 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 ALDH3B1P43353 468 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 MMP16P51512 607 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 CSNK2BP67870 215 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 MALLQ13021 153 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 FBXW12Q6X9E4 464 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 OR8B12Q8NGG6 310 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 RORBQ92753 470 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 RNF166Q96A37 237 aaPredicted RBP18.97■□□□□ 0.63
SHMT1-203ENST00000354098 HAVCR1Q96D42 359 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 C4orf36Q96KX1 117 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 SIGLEC11Q96RL6 698 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 TAAR3PQ9P1P4 343 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 CLEC2DQ9UHP7 191 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 R4GMQ9 66 aa18.97■□□□□ 0.63
SHMT1-203ENST00000354098 A0A1W2PPW3 197 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 OVOL3O00110 214 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 EVX1P49640 407 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 GFOD2Q3B7J2 385 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 ZNF829Q3KNS6 432 aaPredicted RBP18.96■□□□□ 0.63
SHMT1-203ENST00000354098 ZCCHC24Q8N2G6 241 aaKnown RBP18.96■□□□□ 0.63
SHMT1-203ENST00000354098 ZNF786Q8N393 782 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 STX19Q8N4C7 294 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 OR52H1Q8NGJ2 320 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 CACNG6Q9BXT2 260 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 PBOV1Q9GZY1 135 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 SP140LQ9H930 580 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 G6PC2Q9NQR9 355 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 SCN3BQ9NY72 215 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 GTF2A1LQ9UNN4 478 aa18.96■□□□□ 0.63
SHMT1-203ENST00000354098 RAC2P15153 192 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 SELENOVP59797 346 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 SNRPD2P62316 118 aaKnown RBP18.95■□□□□ 0.62
SHMT1-203ENST00000354098 ACTA2P62736 377 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 ACTG2P63267 376 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 OR2T2Q6IF00 324 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 FAM220AQ7Z4H9 259 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 KCTD20Q7Z5Y7 419 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 CDH24Q86UP0 819 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 GTF3AQ92664 365 aaKnown RBP18.95■□□□□ 0.62
SHMT1-203ENST00000354098 PIGTQ969N2 578 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 OR10A2Q9H208 303 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 LOC110117498-PIK3R3F6TDL0 507 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 H3BSA7 217 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 CCDC159P0C7I6 412 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 CRHBPP24387 322 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 OR2G6Q5TZ20 316 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 PGAP1Q75T13 922 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 PELI1Q96FA3 418 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 REEP6Q96HR9 211 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 SOX7Q9BT81 388 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 REPIN1Q9BWE0 567 aaKnown RBP18.95■□□□□ 0.62
SHMT1-203ENST00000354098 PURGQ9UJV8 347 aaKnown RBP18.95■□□□□ 0.62
SHMT1-203ENST00000354098 OR52A1Q9UKL2 312 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 SLC22A13Q9Y226 551 aa18.95■□□□□ 0.62
SHMT1-203ENST00000354098 EXOSC1Q9Y3B2 195 aaKnown RBP18.95■□□□□ 0.62
SHMT1-203ENST00000354098 XRCC2O43543 280 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 TACSTD2P09758 323 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 MYL12AP19105 171 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 KITLGP21583 273 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 DNASE1P24855 282 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 SLC35A2P78381 396 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 TIGD6Q17RP2 521 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 NKPD1Q17RQ9 610 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 MRPL21Q7Z2W9 205 aaKnown RBP18.94■□□□□ 0.62
SHMT1-203ENST00000354098 OR5AS1Q8N127 324 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 SYS1Q8N2H4 156 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 SPSB4Q96A44 273 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 LYZL4Q96KX0 146 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 ERVK-18Q9QC07 812 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 NUFIP1Q9UHK0 495 aaKnown RBP18.94■□□□□ 0.62
SHMT1-203ENST00000354098 EDARQ9UNE0 448 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 TPRKBQ9Y3C4 175 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 SNX5Q9Y5X3 404 aa18.94■□□□□ 0.62
SHMT1-203ENST00000354098 ACOD1A6NK06 481 aa18.93■□□□□ 0.62
SHMT1-203ENST00000354098 TIMM8AO60220 97 aaPredicted RBP18.93■□□□□ 0.62
SHMT1-203ENST00000354098 LILRA1O75019 489 aa18.93■□□□□ 0.62
SHMT1-203ENST00000354098 TTRP02766 147 aa18.93■□□□□ 0.62
SHMT1-203ENST00000354098 CDK1P06493 297 aa18.93■□□□□ 0.62
SHMT1-203ENST00000354098 NAT2P11245 290 aa18.93■□□□□ 0.62
SHMT1-203ENST00000354098 MMP15P51511 669 aa18.93■□□□□ 0.62
SHMT1-203ENST00000354098 MED21Q13503 144 aa18.93■□□□□ 0.62
SHMT1-203ENST00000354098 CATSPERDQ86XM0 798 aa18.93■□□□□ 0.62
SHMT1-203ENST00000354098 PRSS35Q8N3Z0 413 aa18.93■□□□□ 0.62
SHMT1-203ENST00000354098 SPRYD4Q8WW59 207 aaPredicted RBP18.93■□□□□ 0.62
SHMT1-203ENST00000354098 DUSP21Q9H596 190 aa18.93■□□□□ 0.62
SHMT1-203ENST00000354098 CXorf56Q9H5V9 222 aa18.93■□□□□ 0.62
SHMT1-203ENST00000354098 PMF1-BGLAPU3KQ54 211 aa18.93■□□□□ 0.62
SHMT1-203ENST00000354098 E9PI62 339 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 M0R233 179 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 NDUFS7O75251 213 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 RBM48Q5RL73 367 aaKnown RBP18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms