RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 EMC6Q9BV81 110 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 ALX4Q9H161 411 aaPredicted RBP11.38□□□□□ -0.59
CLK3-201ENST00000345005 AUNIPQ9H7T9 357 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 MRPL22Q9NWU5 206 aaKnown RBP11.38□□□□□ -0.59
CLK3-201ENST00000345005 B4GALT7Q9UBV7 327 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 MRM2Q9UI43 246 aaKnown RBP11.38□□□□□ -0.59
CLK3-201ENST00000345005 IKZF2Q9UKS7 526 aa11.38□□□□□ -0.59
CLK3-201ENST00000345005 A0A0J9YW62 118 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 ZNF726A6NNF4 738 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 PRR32B1ATL7 298 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 ZNF814B7Z6K7 855 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 PSMD9O00233 223 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 HRGP04196 525 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 NMBP08949 121 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 FGF2P09038 288 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 OR8G3PP0DMU2 310 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 CXCL2P19875 107 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 PSMB10P40306 273 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 RAD52P43351 418 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 FGL1Q08830 312 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 Q499Y3 187 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 TEX30Q5JUR7 227 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 LIPNQ5VXI9 398 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 KCTD18Q6PI47 426 aaPredicted RBP11.37□□□□□ -0.59
CLK3-201ENST00000345005 SLC26A10Q8NG04 563 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 OR6M1Q8NGM8 313 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 ST8SIA4Q92187 359 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 WBP1Q96G27 269 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 DERL3Q96Q80 235 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 CHIAQ9BZP6 476 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 CCDC86Q9H6F5 360 aaKnown RBP11.37□□□□□ -0.59
CLK3-201ENST00000345005 SLC17A5Q9NRA2 495 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 PCDHB16Q9NRJ7 776 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 PLA2G3Q9NZ20 509 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 KCNG2Q9UJ96 466 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 PINLYPA6NC86 204 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 ARGFXA6NJG6 315 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 XRCC3O43542 346 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 UPK3AO75631 287 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 ABHD16AO95870 558 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 SPARCP09486 303 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 PGA4P0DJD7 388 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 PGA3P0DJD8 388 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 GABRA1P14867 456 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 RPA2P15927 270 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 CFPP27918 469 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 RAC3P60763 192 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 FMODQ06828 376 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 GSG1LQ6UXU4 331 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 WDFY1Q8IWB7 410 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 NOXO1Q8NFA2 376 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 OR13C5Q8NGS8 318 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 OR6K3Q8NGY3 331 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 SLC25A38Q96DW6 304 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 FOXN4Q96NZ1 517 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 FLVCR2Q9UPI3 526 aa11.37□□□□□ -0.59
CLK3-201ENST00000345005 KLF13Q9Y2Y9 288 aaPredicted RBP11.37□□□□□ -0.59
CLK3-201ENST00000345005 PHF3Q92576 2039 aaKnown RBP11.37□□□□□ -0.59
CLK3-201ENST00000345005 F5H5P2 479 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 H7C417 338 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 TNFSF11O14788 317 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 RAMP1O60894 148 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 GLSO94925 669 aaPredicted RBP11.36□□□□□ -0.59
CLK3-201ENST00000345005 RPP14O95059 124 aaKnown RBP11.36□□□□□ -0.59
CLK3-201ENST00000345005 MELTFP08582 738 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 NR2C1P13056 603 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 CARD18P57730 90 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 ROM1Q03395 351 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 ALKBH1Q13686 389 aaKnown RBP11.36□□□□□ -0.59
CLK3-201ENST00000345005 EIF2B1Q14232 305 aaKnown RBP11.36□□□□□ -0.59
CLK3-201ENST00000345005 PCK2Q16822 640 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 WIPI1Q5MNZ9 446 aaPredicted RBP11.36□□□□□ -0.59
CLK3-201ENST00000345005 HES5Q5TA89 166 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 ATP1A1-AS1Q5TC04 95 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 ESPNLQ6ZVH7 1005 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.36□□□□□ -0.59
CLK3-201ENST00000345005 VASH2Q86V25 355 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 SULF2Q8IWU5 870 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 CDH26Q8IXH8 852 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 CCDC36Q8IYA8 594 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 ZNF679Q8IYX0 411 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 STPG2Q8N412 459 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 ZNF433Q8N7K0 673 aaPredicted RBP11.36□□□□□ -0.59
CLK3-201ENST00000345005 BVESQ8NE79 360 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 OR6N1Q8NGY5 312 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 ORAI1Q96D31 301 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 OR8B4Q96RC9 309 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 SEC22CQ9BRL7 303 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 BEX1Q9HBH7 125 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 DLL3Q9NYJ7 618 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 MTFP1Q9UDX5 166 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 OPN4Q9UHM6 478 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 CDV3Q9UKY7 258 aaKnown RBP11.36□□□□□ -0.59
CLK3-201ENST00000345005 CEP250Q9BV73 2442 aa11.36□□□□□ -0.59
CLK3-201ENST00000345005 A0A0B4J203 849 aa11.35□□□□□ -0.59
CLK3-201ENST00000345005 A0A0D9SG52 128 aa11.35□□□□□ -0.59
CLK3-201ENST00000345005 A0A1W2PPK0 400 aa11.35□□□□□ -0.59
CLK3-201ENST00000345005 OR5H15A6NDH6 313 aa11.35□□□□□ -0.59
CLK3-201ENST00000345005 NPIPA2E9PIF3 369 aa11.35□□□□□ -0.59
CLK3-201ENST00000345005 NPIPA3F8WFD2 350 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms