RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 C11orf54Q9H0W9 315 aaPredicted RBP11.71□□□□□ -0.54
HMGB1-202ENST00000339872 ABCG5Q9H222 651 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 CLCF1Q9UBD9 225 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 A0A0U1RQV5 110 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 FUOMA2VDF0 154 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 K7EM74 188 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 EEF1E1O43324 174 aaKnown RBP11.7□□□□□ -0.54
HMGB1-202ENST00000339872 MMP7P09237 267 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-202ENST00000339872 RAB3AP20336 220 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 HGFACQ04756 655 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 SNAI3Q3KNW1 292 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 ZNF57Q68EA5 555 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-202ENST00000339872 FAM166AQ6J272 317 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 Q6ZS92 163 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 OR6M1Q8NGM8 313 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 GMPPAQ96IJ6 420 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-202ENST00000339872 THAP7Q9BT49 309 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-202ENST00000339872 RNF121Q9H920 327 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 GP6Q9HCN6 339 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 ZNF224Q9NZL3 707 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 PLA2G10O15496 165 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 LANCL1O43813 399 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 IGLV3-1P01715 115 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 TMIGD3P0DMS9 266 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-202ENST00000339872 RFX2P48378 723 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 C2orf76Q3KRA6 126 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 SLC36A2Q495M3 483 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 PABPC1L2AQ5JQF8 200 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 ADGRE4PQ86SQ3 457 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 OR52H1Q8NGJ2 320 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 OR14K1Q8NGZ2 314 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 TRIM63Q969Q1 353 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 HAVCR1Q96D42 359 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 SLC22A4Q9H015 551 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 OR10A2Q9H208 303 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 TMEM138Q9NPI0 162 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 PLSCR2Q9NRY7 297 aa11.7□□□□□ -0.54
HMGB1-202ENST00000339872 LOC100289279A0A1B0GTE1 492 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 MKRN2OSH3BPM6 223 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 CDK2P24941 298 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 BCAP31P51572 246 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 EFNB2P52799 333 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 DGCR2P98153 550 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 TMEM69Q5SWH9 247 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 GCNT2Q8N0V5 402 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 OR52N4Q8NGI2 321 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 SLC25A28Q96A46 364 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 SORCS2Q96PQ0 1159 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 SSUH2Q9Y2M2 353 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 MSRB2Q9Y3D2 182 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 RTTNQ86VV8 2226 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 LOC390937A0A1W2PQ73 354 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 SULT1B1O43704 296 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 SS18L1O75177 396 aaPredicted RBP11.69□□□□□ -0.54
HMGB1-202ENST00000339872 DHRS3O75911 302 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 HLA-HP01893 362 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 LCATP04180 440 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 ARSBP15848 533 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 EIF2S3P41091 472 aaKnown RBP11.69□□□□□ -0.54
HMGB1-202ENST00000339872 MMP15P51511 669 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 ZNF529Q6P280 563 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 PGAP1Q75T13 922 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 ZNF627Q7L945 461 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 RBMXL3Q8N7X1 1067 aaKnown RBP11.69□□□□□ -0.54
HMGB1-202ENST00000339872 SNRNP27Q8WVK2 155 aaKnown RBP11.69□□□□□ -0.54
HMGB1-202ENST00000339872 FOXRED1Q96CU9 486 aaPredicted RBP11.69□□□□□ -0.54
HMGB1-202ENST00000339872 NEDD4LQ96PU5 975 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 LUZP4Q9P127 313 aa11.69□□□□□ -0.54
HMGB1-202ENST00000339872 TMEM272A0A1B0GTI8 110 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 ERCC1P07992 297 aaPredicted RBP11.68□□□□□ -0.54
HMGB1-202ENST00000339872 CD3GP09693 182 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 CD37P11049 281 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 KRTAP27-1Q3LI81 207 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 C1orf100Q5SVJ3 147 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 FBXW9Q5XUX1 488 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 OR4D6Q8NGJ1 314 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 OR2AE1Q8NHA4 323 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 GCDHQ92947 438 aaPredicted RBP11.68□□□□□ -0.54
HMGB1-202ENST00000339872 AUNIPQ9H7T9 357 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 GLRX2Q9NS18 164 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 RABL2AQ9UBK7 228 aaPredicted RBP11.68□□□□□ -0.54
HMGB1-202ENST00000339872 RABL2BQ9UNT1 228 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 V9GYS6 101 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 LYRM1O43325 122 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 CD79AP11912 226 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 MAP2K3P46734 347 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 OR3A2P47893 321 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 MTFR2Q6P444 385 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 LYPD6Q86Y78 171 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 CELF2-AS1Q8N7Q2 184 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 CPEB3Q8NE35 698 aaKnown RBP11.68□□□□□ -0.54
HMGB1-202ENST00000339872 YIPF5Q969M3 257 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 SGK3Q96BR1 496 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 METTL17Q9H7H0 456 aaPredicted RBP11.68□□□□□ -0.54
HMGB1-202ENST00000339872 CNTD2Q9H8S5 307 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 LHX6Q9UPM6 363 aa11.68□□□□□ -0.54
HMGB1-202ENST00000339872 LAMA5O15230 3695 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 SPENQ96T58 3664 aaKnown RBP11.67□□□□□ -0.54
HMGB1-202ENST00000339872 ZNF503-AS2A6NEH8 195 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 CTDSPLO15194 276 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms