RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 LRRTM1Q86UE6 522 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 MDP1Q86V88 176 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 WDR31Q8NA23 367 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 OR51E1Q8TCB6 317 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 ACOT12Q8WYK0 555 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 SPSB4Q96A44 273 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 SLITRK2Q9H156 845 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 SLC24A3Q9HC58 644 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 GPR84Q9NQS5 396 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 CRNNQ9UBG3 495 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 USP24Q9UPU5 2620 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 RP1L1Q8IWN7 2480 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 OR5H1A6NKK0 313 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 RAD51DO75771 328 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 IGKV3-15P01624 115 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 CD79AP11912 226 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 CBR1P16152 277 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 STOMP27105 288 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 APEX1P27695 318 aaKnown RBP12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 SLC6A9P48067 706 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 SOX2P48431 317 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 PSMD7P51665 324 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 CASP6P55212 293 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 MXD1Q05195 221 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 PMPCAQ10713 525 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 MOGQ16653 247 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 ODF4Q2M2E3 257 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 C3orf36Q3SXR2 165 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 SFXN4Q6P4A7 337 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 BHLHA15Q7RTS1 189 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 CXorf67Q86X51 503 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 OR13C3Q8NGS6 347 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 OR14K1Q8NGZ2 314 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 WDFY2Q96P53 400 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 OR10A4Q9H209 315 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 BRD7Q9NPI1 651 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 AMDHD2Q9Y303 409 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 MEMO1Q9Y316 297 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 PEX16Q9Y5Y5 336 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 V9GYS6 101 aa12.96□□□□□ -0.33
CCDC88C-202ENST00000334448 TRAV8-7A0A075B6U6 113 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 XRCC2O43543 280 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 DHRS3O75911 302 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 ALX3O95076 343 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 IGLV1-44P01699 117 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 ADRA2CP18825 462 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 THBS2P35442 1172 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 ETV6P41212 452 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 MAGEB1P43366 347 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 SNAI3Q3KNW1 292 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 STAC2Q6ZMT1 411 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 KRT74Q7RTS7 529 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 SSX8Q7RTT4 187 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 NAA40Q86UY6 237 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 LYZL4Q96KX0 146 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 GFI1Q99684 422 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 TPK1Q9H3S4 243 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 OPA3Q9H6K4 179 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 SMURF1Q9HCE7 757 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 TCF7L1Q9HCS4 588 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 ELOVL5Q9NYP7 299 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 CKLFQ9UBR5 152 aa12.95□□□□□ -0.34
CCDC88C-202ENST00000334448 A0A1W2PPK0 400 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 MEGF11A6BM72 1044 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 C5orf63A6NC05 138 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 AIPO00170 330 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 MTRF1O75570 445 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 LCATP04180 440 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 EPXP11678 715 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 HOXC12P31275 282 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 APLNRP35414 380 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 DDOSTP39656 456 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 TIMM23BQ5SRD1 257 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 LUZP2Q86TE4 346 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 LYPD6Q86Y78 171 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 RELL2Q8NC24 303 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 STEAP2Q8NFT2 490 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 OR1J2Q8NGS2 313 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 ZFAND2BQ8WV99 257 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 AKAP1Q92667 903 aaKnown RBP eCLIP12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 RND1Q92730 232 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 APOBEC3DQ96AK3 386 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 SGK3Q96BR1 496 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 MRI1Q9BV20 369 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 CXorf56Q9H5V9 222 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 AKIP1Q9NQ31 210 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 TBCCD1Q9NVR7 557 aa12.94□□□□□ -0.34
CCDC88C-202ENST00000334448 INTS1Q8N201 2190 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 SHANK1Q9Y566 2161 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 hCG_38984A0A1B0GV85 526 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 IFITM5A6NNB3 132 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 THBS4P35443 961 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 BMXP51813 675 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 SCAND1P57086 179 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 OR10A3P58181 314 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 OR8B8Q15620 311 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 ZBTB37Q5TC79 503 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 PGAP1Q75T13 922 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 UTS2BQ765I0 119 aa12.93□□□□□ -0.34
CCDC88C-202ENST00000334448 SERPINA12Q8IW75 414 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms