RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SCRT1Q9BWW7 348 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 SH3BGRL3Q9H299 93 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 PTGES2Q9H7Z7 377 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 CNTD2Q9H8S5 307 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 SPAG17Q6Q759 2223 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 SCGB1D2O95969 90 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 KNG1P01042 644 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 IFNA17P01571 189 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 HIST1H1BP16401 226 aaKnown RBP12.03□□□□□ -0.48
SKA3-201ENST00000298260 SNCAP37840 140 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 P2RY2P41231 377 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 CLDN6P56747 220 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 TAS2R60P59551 318 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 MGAT2Q10469 447 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 SLC17A1Q14916 467 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 C14orf28Q4W4Y0 310 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 COX15Q7KZN9 410 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 OR4K15Q8NH41 348 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 AQP3Q92482 292 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 AQP10Q96PS8 301 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 WASF3Q9UPY6 502 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 EMC9Q9Y3B6 208 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 ARGFXA6NJG6 315 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 PRNPP04156 253 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 KLK2P20151 261 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 MDKP21741 143 aaPredicted RBP12.03□□□□□ -0.48
SKA3-201ENST00000298260 DNASE1L1P49184 302 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 CX3CR1P49238 355 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 SCAND1P57086 179 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 TMEM33P57088 247 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 RPS4XP62701 263 aaKnown RBP12.03□□□□□ -0.48
SKA3-201ENST00000298260 ZP2Q05996 745 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 PDGFRLQ15198 375 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 CNKSR3Q6P9H4 555 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 HEPN1Q6WQI6 88 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 TMEM184AQ6ZMB5 413 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 ERN2Q76MJ5 926 aaKnown RBP12.03□□□□□ -0.48
SKA3-201ENST00000298260 ZDHHC22Q8N966 263 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 AVL9Q8NBF6 648 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 OR13C3Q8NGS6 347 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 GAL3ST3Q96A11 431 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 NTNG2Q96CW9 530 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 LURAP1Q96LR2 239 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 GNRHR2Q96P88 292 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 RBM14Q96PK6 669 aaKnown RBP12.03□□□□□ -0.48
SKA3-201ENST00000298260 SOX7Q9BT81 388 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 OPA3Q9H6K4 179 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 CRLF2Q9HC73 371 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 CKLFQ9UBR5 152 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 LSM5Q9Y4Y9 91 aaKnown RBP12.03□□□□□ -0.48
SKA3-201ENST00000298260 HS3ST3B1Q9Y662 390 aa12.03□□□□□ -0.48
SKA3-201ENST00000298260 A0A1W2PP11 408 aa12.02□□□□□ -0.48
SKA3-201ENST00000298260 TLX1P31314 330 aaPredicted RBP12.02□□□□□ -0.48
SKA3-201ENST00000298260 FCGR2CP31995 323 aa12.02□□□□□ -0.48
SKA3-201ENST00000298260 PPP1CCP36873 323 aaKnown RBP12.02□□□□□ -0.48
SKA3-201ENST00000298260 RAP1AP62834 184 aa12.02□□□□□ -0.48
SKA3-201ENST00000298260 REC114Q7Z4M0 266 aa12.02□□□□□ -0.48
SKA3-201ENST00000298260 OR9K2Q8NGE7 335 aa12.02□□□□□ -0.48
SKA3-201ENST00000298260 SCARF2Q96GP6 870 aaPredicted RBP12.02□□□□□ -0.48
SKA3-201ENST00000298260 OR5B2Q96R09 309 aa12.02□□□□□ -0.48
SKA3-201ENST00000298260 DCAF16Q9NXF7 216 aa12.02□□□□□ -0.48
SKA3-201ENST00000298260 DNAJB11Q9UBS4 358 aa12.02□□□□□ -0.48
SKA3-201ENST00000298260 HDGFL3Q9Y3E1 203 aa12.02□□□□□ -0.48
SKA3-201ENST00000298260 TGIF2-C20orf24A0A0A6YYL0 155 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 B3GALT2O43825 422 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 SOX15O60248 233 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 TMEM127O75204 238 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 CTSBP07858 339 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 GLI4P10075 376 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 CMPK1P30085 196 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 CHAF1BQ13112 559 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 TMEM268Q5VZI3 342 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 OR52N4Q8NGI2 321 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 OR10G6Q8NH81 332 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 OTOSQ8NHW6 89 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 PARP11Q9NR21 331 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 FLVCR1Q9Y5Y0 555 aa12.02□□□□□ -0.49
SKA3-201ENST00000298260 OTOL1A6NHN0 477 aaPredicted RBP12.01□□□□□ -0.49
SKA3-201ENST00000298260 HIST1H2BKO60814 126 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 APBB3O95704 486 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 HIST1H2BJP06899 126 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 SLC35G6P0C7Q6 338 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 NR2C1P13056 603 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 HIST1H2BOP23527 126 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 HIST1H2BBP33778 126 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 GABRA4P48169 554 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 HIST1H2BDP58876 126 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 HIST1H2BCP62807 126 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 ERV3-1Q14264 604 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 HIST2H2BEQ16778 126 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 TMEM128Q5BJH2 165 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.01□□□□□ -0.49
SKA3-201ENST00000298260 SLC43A2Q8N370 569 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 HIST1H2BHQ93079 126 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 TCTN2Q96GX1 697 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 LRFN5Q96NI6 719 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 HIST1H2BNQ99877 126 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 HIST1H2BMQ99879 126 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 SLC26A1Q9H2B4 701 aa12.01□□□□□ -0.49
SKA3-201ENST00000298260 PARPBPQ9NWS1 579 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms