RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 HOXB1P14653 301 aaPredicted RBP12.3□□□□□ -0.44
SS18-201ENST00000269137 ATF1P18846 271 aa12.3□□□□□ -0.44
SS18-201ENST00000269137 COX5AP20674 150 aa12.3□□□□□ -0.44
SS18-201ENST00000269137 IGHV1-2P23083 117 aa12.3□□□□□ -0.44
SS18-201ENST00000269137 ANOS1P23352 680 aa12.3□□□□□ -0.44
SS18-201ENST00000269137 CFPP27918 469 aa12.3□□□□□ -0.44
SS18-201ENST00000269137 CD40LGP29965 261 aa12.3□□□□□ -0.44
SS18-201ENST00000269137 SFRP5Q5T4F7 317 aa12.3□□□□□ -0.44
SS18-201ENST00000269137 DCDC5Q6ZRR9 648 aa12.3□□□□□ -0.44
SS18-201ENST00000269137 ZNF433Q8N7K0 673 aaPredicted RBP12.3□□□□□ -0.44
SS18-201ENST00000269137 KDF1Q8NAX2 398 aaPredicted RBP12.3□□□□□ -0.44
SS18-201ENST00000269137 NANOS1Q8WY41 292 aaKnown RBP12.3□□□□□ -0.44
SS18-201ENST00000269137 COX4I2Q96KJ9 171 aa12.3□□□□□ -0.44
SS18-201ENST00000269137 OR10A2Q9H208 303 aa12.3□□□□□ -0.44
SS18-201ENST00000269137 TP63Q9H3D4 680 aaPredicted RBP12.3□□□□□ -0.44
SS18-201ENST00000269137 ZNF835Q9Y2P0 537 aa12.3□□□□□ -0.44
SS18-201ENST00000269137 N6AMT1Q9Y5N5 214 aa12.3□□□□□ -0.44
SS18-201ENST00000269137 TPRP12270 2363 aaKnown RBP12.29□□□□□ -0.44
SS18-201ENST00000269137 MED19A0JLT2 244 aaPredicted RBP12.29□□□□□ -0.44
SS18-201ENST00000269137 MEGF11A6BM72 1044 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 ZNF503-AS2A6NEH8 195 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 PRRG2O14669 202 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 SLC2A2P11168 524 aaPredicted RBP12.29□□□□□ -0.44
SS18-201ENST00000269137 CEACAM8P31997 349 aaPredicted RBP12.29□□□□□ -0.44
SS18-201ENST00000269137 PPP5CP53041 499 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 RAB1AP62820 205 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 KLRB1Q12918 225 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 RGS21Q2M5E4 152 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 TBRG1Q3YBR2 411 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 HIKESHIQ53FT3 197 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 GFRALQ6UXV0 394 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 SERPINA12Q8IW75 414 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 GABRG1Q8N1C3 465 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 CENPSQ8N2Z9 138 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 C1orf162Q8NEQ5 155 aaPredicted RBP12.29□□□□□ -0.44
SS18-201ENST00000269137 FGGYQ96C11 551 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 MRI1Q9BV20 369 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 ASF1BQ9NVP2 202 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 PROCRQ9UNN8 238 aa12.29□□□□□ -0.44
SS18-201ENST00000269137 C5orf63A6NC05 138 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 ANXA2P2A6NMY6 339 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 SLC19A2O60779 497 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 CD79AP11912 226 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 DDOSTP39656 456 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 HGFACQ04756 655 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 ZNF529Q6P280 563 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 DOLPP1Q86YN1 238 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 OR1J2Q8NGS2 313 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 OR14K1Q8NGZ2 314 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 LYZL4Q96KX0 146 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 NOX3Q9HBY0 568 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 TAS2R4Q9NYW5 299 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 ZNF391Q9UJN7 358 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 ADAM30Q9UKF2 790 aa12.28□□□□□ -0.44
SS18-201ENST00000269137 LOC100509620A0A075B734 347 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 LOC390937A0A1W2PQ73 354 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 LMX1BO60663 402 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 HPGDSO60760 199 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 LCATP04180 440 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 MAS1P04201 325 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 GLI4P10075 376 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 PLP2Q04941 152 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 P2RY6Q15077 328 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 GABRA6Q16445 453 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 GSG1Q2KHT4 349 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 SNAI3Q3KNW1 292 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 COLCA1Q6ZS62 124 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 COMMD2Q86X83 199 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 NAXEQ8NCW5 288 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 OR5D14Q8NGL3 314 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 SGK3Q96BR1 496 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 ADAT3Q96EY9 351 aaPredicted RBP12.27□□□□□ -0.44
SS18-201ENST00000269137 DIRAS2Q96HU8 199 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 C1QTNF5Q9BXJ0 243 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 RGCCQ9H4X1 137 aa12.27□□□□□ -0.44
SS18-201ENST00000269137 DHRS7CA6NNS2 312 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 TBX1O43435 398 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 DHRS3O75911 302 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 OCMP0CE72 109 aaPredicted RBP12.27□□□□□ -0.45
SS18-201ENST00000269137 SFTPCP11686 197 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 STOMP27105 288 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 EVX1P49640 407 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 PRR30Q53SZ7 412 aaPredicted RBP12.27□□□□□ -0.45
SS18-201ENST00000269137 RPRMLQ8N4K4 120 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 ZNF610Q8N9Z0 462 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 TRMT10AQ8TBZ6 339 aaKnown RBP12.27□□□□□ -0.45
SS18-201ENST00000269137 PPP1R14BQ96C90 147 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 C10orf35Q96D05 121 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 FAM71F1Q96KD3 344 aaPredicted RBP12.27□□□□□ -0.45
SS18-201ENST00000269137 CMTM3Q96MX0 182 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 SOSTQ9BQB4 213 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 SOX7Q9BT81 388 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 SFXN3Q9BWM7 321 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 SPATA2Q9UM82 520 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 V9GYH0 126 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 V9GYS6 101 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 ATRXP46100 2492 aa12.27□□□□□ -0.45
SS18-201ENST00000269137 CIB4A0PJX0 185 aa12.26□□□□□ -0.45
SS18-201ENST00000269137 MTRF1O75570 445 aaKnown RBP12.26□□□□□ -0.45
SS18-201ENST00000269137 LYZL6O75951 148 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms