RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 SGCEO43556 437 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 DOK2O60496 412 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 SLC16A7O60669 478 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 KHDRBS3O75525 346 aaKnown RBP13.58□□□□□ -0.24
CLN3-264ENST00000637985 DIRAS1O95057 198 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 TXNDC12O95881 172 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 SEMG1P04279 462 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 MDH2P40926 338 aaKnown RBP13.58□□□□□ -0.24
CLN3-264ENST00000637985 LSM6P62312 80 aaKnown RBP13.58□□□□□ -0.24
CLN3-264ENST00000637985 TNFAIP6P98066 277 aaPredicted RBP13.58□□□□□ -0.24
CLN3-264ENST00000637985 AQP6Q13520 282 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 SPATS1Q496A3 300 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 SMARCD3Q6STE5 483 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 ZER1Q7Z7L7 766 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 GLB1L2Q8IW92 636 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 NPEPL1Q8NDH3 523 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 MCUR1Q96AQ8 359 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 SYT4Q9H2B2 425 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 MSL2Q9HCI7 577 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 NDE1Q9NXR1 346 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 ARL2BPQ9Y2Y0 163 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 IER3IP1Q9Y5U9 82 aa13.58□□□□□ -0.24
CLN3-264ENST00000637985 IMPA2O14732 288 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 DCTN3O75935 186 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 GADD45GO95257 159 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 ABHD16AO95870 558 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 HTR5AP47898 357 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 FXYD6P3P58550 94 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 GNGT1P63211 74 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 OXLD1Q5BKU9 147 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 ZMAT1Q5H9K5 638 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 C16orf89Q6UX73 402 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 VASH1Q7L8A9 365 aaPredicted RBP13.57□□□□□ -0.24
CLN3-264ENST00000637985 PIGWQ7Z7B1 504 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 MUC20Q8N307 709 aaPredicted RBP13.57□□□□□ -0.24
CLN3-264ENST00000637985 SAMD8Q96LT4 415 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 NSMCE2Q96MF7 247 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 COG8Q96MW5 612 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 CDRT15Q96T59 188 aa13.57□□□□□ -0.24
CLN3-264ENST00000637985 COA3Q9Y2R0 106 aaPredicted RBP13.57□□□□□ -0.24
CLN3-264ENST00000637985 SOCS2O14508 198 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 FABP3P05413 133 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 GSTM3P21266 225 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 CRABP1P29762 137 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 IFNGR2P38484 337 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 FGF12P61328 243 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 GNB2P62879 340 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 SPIBQ01892 262 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 CDK5R2Q13319 367 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 KCNMB1Q16558 191 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 RFX4Q33E94 735 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 MTX3Q5HYI7 312 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 PGM2L1Q6PCE3 622 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 DNM1P34Q6PK57 102 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 PTCHD4Q6ZW05 846 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 NUAK2Q9H093 628 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 IL1RAPQ9NPH3 570 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 ARL8BQ9NVJ2 186 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 ATPIF1Q9UII2 106 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 V9GYQ6 96 aa13.56□□□□□ -0.24
CLN3-264ENST00000637985 J3QW42 95 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 ARPC2O15144 300 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 ARPC3O15145 178 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 GPR37O15354 613 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 IGHV4-59P01825 116 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 TNFRSF1AP19438 455 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 FPR3P25089 353 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 SLC6A6P31641 620 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 CDKN2AP42771 156 aaKnown RBP13.55□□□□□ -0.24
CLN3-264ENST00000637985 IER3P46695 156 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 MNAT1P51948 309 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 PSG7Q13046 419 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 KLBQ86Z14 1044 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 FITM2Q8N6M3 262 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 FANK1Q8TC84 345 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 SGCDQ92629 289 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 WWC2-AS2Q96NR7 200 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 ERMAPQ96PL5 475 aaPredicted RBP13.55□□□□□ -0.24
CLN3-264ENST00000637985 NUDT16L1Q9BRJ7 211 aaKnown RBP13.55□□□□□ -0.24
CLN3-264ENST00000637985 RERGLQ9H628 205 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 TMCC3Q9ULS5 477 aa13.55□□□□□ -0.24
CLN3-264ENST00000637985 OR6C6A6NF89 314 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 TMEM178BH3BS89 294 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 TIMM8AO60220 97 aaPredicted RBP13.54□□□□□ -0.24
CLN3-264ENST00000637985 OR10H3O60404 316 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 TSPAN9O75954 239 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 PPP1R3DO95685 299 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 RPS2P15880 293 aaKnown RBP13.54□□□□□ -0.24
CLN3-264ENST00000637985 KITLGP21583 273 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 RRM2P31350 389 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 MSX2P35548 267 aaPredicted RBP13.54□□□□□ -0.24
CLN3-264ENST00000637985 RGS6P49758 472 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 GYS2P54840 703 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 MXRA7P84157 204 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 C1orf94Q6P1W5 598 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 CCBE1Q6UXH8 406 aaPredicted RBP13.54□□□□□ -0.24
CLN3-264ENST00000637985 GDPGP1Q6ZNW5 385 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 DEFB107AQ8IZN7 70 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 OR1F12Q8NHA8 337 aa13.54□□□□□ -0.24
CLN3-264ENST00000637985 PLEKHA8Q96JA3 519 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms