RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 FGF12P61328 243 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 SRSF4Q08170 494 aaKnown RBP13.46□□□□□ -0.25
CLN3-246ENST00000636228 MPPED2Q15777 294 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 ZNF181Q2M3W8 571 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 WDR25Q64LD2 544 aaPredicted RBP13.46□□□□□ -0.25
CLN3-246ENST00000636228 C16orf87Q6PH81 154 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 TREML4Q6UXN2 200 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 ZNF841Q6ZN19 808 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 COLCA1Q6ZS62 124 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 C9orf139Q6ZV77 190 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 FITM2Q8N6M3 262 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 BOLLQ8N9W6 283 aaKnown RBP13.46□□□□□ -0.25
CLN3-246ENST00000636228 SLC26A10Q8NG04 563 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 TMIGD2Q96BF3 282 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 FUZQ9BT04 418 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 RPRD1BQ9NQG5 326 aaKnown RBP13.46□□□□□ -0.25
CLN3-246ENST00000636228 DCAF13Q9NV06 445 aaKnown RBP13.46□□□□□ -0.25
CLN3-246ENST00000636228 CLN8Q9UBY8 286 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 TMCC3Q9ULS5 477 aa13.46□□□□□ -0.25
CLN3-246ENST00000636228 PKD1L1Q8TDX9 2849 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 POM121CA8CG34 1229 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 C22orf46C9J442 243 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 PPIAL4GP0DN37 164 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 IRF2P14316 349 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 ANOS1P23352 680 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 RPS27P42677 84 aaKnown RBP13.45□□□□□ -0.26
CLN3-246ENST00000636228 KRT72Q14CN4 511 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 RFX4Q33E94 735 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 KRTAP27-1Q3LI81 207 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 CLEC12AQ5QGZ9 265 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 RUSC1-AS1Q66K80 236 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 SFRP4Q6FHJ7 346 aaPredicted RBP13.45□□□□□ -0.26
CLN3-246ENST00000636228 NLRC3Q7RTR2 1065 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 C1orf87Q8N0U7 546 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 FANK1Q8TC84 345 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 ZDHHC16Q969W1 377 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 DHRS1Q96LJ7 313 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 IFT27Q9BW83 186 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 OR52D1Q9H346 318 aa13.45□□□□□ -0.26
CLN3-246ENST00000636228 A0A1B0GWJ7 208 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 C5orf63A6NC05 138 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 OR6C68A6NDL8 312 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 FAM181BA6NEQ2 426 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 CCDC22O60826 627 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 RENP00797 406 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 HLA-DQA2P01906 255 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 SFTPBP07988 381 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 CA6P23280 308 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 CPT2P23786 658 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 SLC6A6P31641 620 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 GATA4P43694 442 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 DEFA6Q01524 100 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 TRAP1Q12931 704 aaKnown RBP13.44□□□□□ -0.26
CLN3-246ENST00000636228 SLC35F1Q5T1Q4 408 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 PGM2L1Q6PCE3 622 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 HACD2Q6Y1H2 254 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 SDR9C7Q8NEX9 313 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 OR2AJ1Q8NGZ0 328 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 TECTBQ96PL2 329 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 ATF6BQ99941 703 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 PCGF1Q9BSM1 259 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 NSRP1Q9H0G5 558 aaKnown RBP13.44□□□□□ -0.26
CLN3-246ENST00000636228 RASSF4Q9H2L5 321 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 MMADHCQ9H3L0 296 aaPredicted RBP13.44□□□□□ -0.26
CLN3-246ENST00000636228 CCDC134Q9H6E4 229 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 MARCH7Q9H992 704 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 KRCC1Q9NPI7 259 aaPredicted RBP13.44□□□□□ -0.26
CLN3-246ENST00000636228 PNRC2Q9NPJ4 139 aaKnown RBP13.44□□□□□ -0.26
CLN3-246ENST00000636228 MRPL22Q9NWU5 206 aaKnown RBP13.44□□□□□ -0.26
CLN3-246ENST00000636228 ADA2Q9NZK5 511 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 ABCD2Q9UBJ2 740 aa13.44□□□□□ -0.26
CLN3-246ENST00000636228 GADD45GO95257 159 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 NOS3P29474 1203 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 GGT2P36268 569 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 CD200P41217 278 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 RAD23AP54725 363 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 SPIBQ01892 262 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 MALLQ13021 153 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 OR8G1Q15617 311 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 SLC36A3Q495N2 470 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 DCDC5Q6ZRR9 648 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 PGAP1Q75T13 922 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 KIR3DL3Q8N743 410 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 OR11L1Q8NGX0 322 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 OR2AE1Q8NHA4 323 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 Q8TCH9 128 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 SPRYD4Q8WW59 207 aaPredicted RBP13.43□□□□□ -0.26
CLN3-246ENST00000636228 ZNRF4Q8WWF5 429 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 MAP6Q96JE9 813 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 CTSZQ9UBR2 303 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 CYB5R1Q9UHQ9 305 aa13.43□□□□□ -0.26
CLN3-246ENST00000636228 SAMD4AQ9UPU9 718 aaKnown RBP13.43□□□□□ -0.26
CLN3-246ENST00000636228 TVP23AA6NH52 213 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 C3orf80F5H4A9 247 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 NDUFAB1O14561 156 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 ARPC3O15145 178 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 OR10H3O60404 316 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 FSTL3O95633 263 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 PYCR1P32322 319 aa13.42□□□□□ -0.26
CLN3-246ENST00000636228 MSX2P35548 267 aaPredicted RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms