RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 ANAPC16Q96DE5 110 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 KTI12Q96EK9 354 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-212ENST00000636194 NSUN5Q96P11 429 aaKnown RBP5.52□□□□□ -1.53
SCN1A-212ENST00000636194 MKRN2Q9H000 416 aaKnown RBP5.52□□□□□ -1.53
SCN1A-212ENST00000636194 C12orf49Q9H741 205 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 MYOZ1Q9NP98 299 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-212ENST00000636194 RFPL4AA6NLU0 287 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 RFPL4AL1F8VTS6 287 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 OR2T7P0C7T2 308 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 CEBPBP17676 345 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 ITGB7P26010 798 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 GSCP56915 257 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-212ENST00000636194 RPL32P62910 135 aaKnown RBP5.52□□□□□ -1.53
SCN1A-212ENST00000636194 ZNF766Q5HY98 468 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 TMEM268Q5VZI3 342 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 LCN8Q6JVE9 175 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 FBXL16Q8N461 479 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 OR4C13Q8NGP0 309 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 UBE2FQ969M7 185 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 PWWP2AQ96N64 755 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 C11orf54Q9H0W9 315 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-212ENST00000636194 GHITMQ9H3K2 345 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 KLF13Q9Y2Y9 288 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-212ENST00000636194 LIPGQ9Y5X9 500 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 TRAV36DV7A0A075B6V5 113 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 CLDN24A6NM45 220 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 ACAA2P42765 397 aaKnown RBP5.52□□□□□ -1.53
SCN1A-212ENST00000636194 P2RX3P56373 397 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 RPS26P62854 115 aaKnown RBP5.52□□□□□ -1.53
SCN1A-212ENST00000636194 OR6S1Q8NH40 331 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 ASB5Q8WWX0 329 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 HSD17B8Q92506 261 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 RPEQ96AT9 228 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 OR6C1Q96RD1 312 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 RNF39Q9H2S5 420 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 LSM2Q9Y333 95 aaKnown RBP5.52□□□□□ -1.53
SCN1A-212ENST00000636194 PREX1Q8TCU6 1659 aa5.52□□□□□ -1.53
SCN1A-212ENST00000636194 MST1RQ04912 1400 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 OR6C76A6NM76 312 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 CDX4O14627 284 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-212ENST00000636194 SIGLEC6O43699 453 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 SLCO2B1O94956 709 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 FGF7P21781 194 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 GDF5P43026 501 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 COL19A1Q14993 1142 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 LPAL2Q16609 132 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 PRTGQ2VWP7 1150 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 OR5AS1Q8N127 324 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 C1orf127Q8N9H9 656 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 OR4D9Q8NGE8 314 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 RSG1Q9BU20 258 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 SLC25A18Q9H1K4 315 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 PSG11Q9UQ72 335 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 B3GALT5Q9Y2C3 310 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 SNX11Q9Y5W9 270 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 PHIPQ8WWQ0 1821 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 LOC107984156A0A0G2JMH3 177 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 ZNF487B1APH4 448 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 M0R1X1 148 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 TMEM127O75204 238 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 GUSBP08236 651 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 CSF2RAP15509 400 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 RUNX3Q13761 415 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 UNQ9370/PRO34162Q6UXP9 181 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 CYHR1Q6ZMK1 362 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 MEPCEQ7L2J0 689 aaKnown RBP5.51□□□□□ -1.53
SCN1A-212ENST00000636194 CCDC190Q86UF4 302 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 ARL17AQ8IVW1 177 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 OR6V1Q8N148 313 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 PHOSPHO2Q8TCD6 241 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 MARC2Q969Z3 335 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 ORAI1Q96D31 301 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 WDR89Q96FK6 387 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-212ENST00000636194 TMEM19Q96HH6 336 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 FAM210BQ96KR6 192 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 NPAP1Q9NZP6 1156 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 DXOO77932 396 aaKnown RBP5.51□□□□□ -1.53
SCN1A-212ENST00000636194 OR13C7P0DN81 318 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 NKX2-5P52952 324 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-212ENST00000636194 FOXO1Q12778 655 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 C9orf135Q5VTT2 229 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 TMEM236Q5W0B7 351 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 CD276Q5ZPR3 534 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 NCR3LG1Q68D85 454 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 GFRALQ6UXV0 394 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 SSX8Q7RTT4 187 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 COMMD6Q7Z4G1 85 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 PDZD3Q86UT5 571 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 CALHM1Q8IU99 346 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 Q8WTZ3 238 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 ZG16BQ96DA0 208 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 ELF4Q99607 663 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-212ENST00000636194 NSG2Q9Y328 171 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 AGLP35573 1532 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 GBF1Q92538 1859 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 MEIKINA0A087WXM9 373 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 PPIHO43447 177 aaKnown RBP5.51□□□□□ -1.53
SCN1A-212ENST00000636194 SEMA7AO75326 666 aa5.51□□□□□ -1.53
SCN1A-212ENST00000636194 C4BPAP04003 597 aaKnown RBP5.51□□□□□ -1.53
SCN1A-212ENST00000636194 CHRM2P08172 466 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms