RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 COL8A2P25067 703 aa16.49■□□□□ 0.23
UPF1-212ENST00000601689 PRKXP51817 358 aa16.49■□□□□ 0.23
UPF1-212ENST00000601689 RIN1Q13671 783 aa16.49■□□□□ 0.23
UPF1-212ENST00000601689 KRTAP27-1Q3LI81 207 aa16.49■□□□□ 0.23
UPF1-212ENST00000601689 SLX4IPQ5VYV7 408 aa16.49■□□□□ 0.23
UPF1-212ENST00000601689 KCTD18Q6PI47 426 aaPredicted RBP16.49■□□□□ 0.23
UPF1-212ENST00000601689 SPRYD4Q8WW59 207 aaPredicted RBP16.49■□□□□ 0.23
UPF1-212ENST00000601689 CIB1Q99828 191 aa16.49■□□□□ 0.23
UPF1-212ENST00000601689 RIBC2Q9H4K1 309 aa16.49■□□□□ 0.23
UPF1-212ENST00000601689 TMEM100Q9NV29 134 aa16.49■□□□□ 0.23
UPF1-212ENST00000601689 N6AMT1Q9Y5N5 214 aa16.49■□□□□ 0.23
UPF1-212ENST00000601689 ABCA1O95477 2261 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 ZAR1LA6NP61 321 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 LYNX1G3V0Z9 82 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 XRCC2O43543 280 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 MITFO75030 526 aaPredicted RBP16.48■□□□□ 0.23
UPF1-212ENST00000601689 ANXA2P07355 339 aaKnown RBP16.48■□□□□ 0.23
UPF1-212ENST00000601689 CD55P08174 381 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 LYNX1P0DP58 116 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 CDC42P60953 191 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 CDK5R2Q13319 367 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 HLXQ14774 488 aaPredicted RBP16.48■□□□□ 0.23
UPF1-212ENST00000601689 NXNL2Q5VZ03 156 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 OR2T2Q6IF00 324 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 SPATC1Q76KD6 591 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 GID4Q8IVV7 300 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 TIGD4Q8IY51 512 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 OR5AS1Q8N127 324 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 TCEANCQ8N8B7 351 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 OR8G5Q8NG78 346 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 OTOSQ8NHW6 89 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 ST7LQ8TDW4 575 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 CCL17Q92583 94 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 HPS1Q92902 700 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 RAB1CQ92928 201 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 TEAD3Q99594 435 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 PKP2Q99959 881 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 C9orf16Q9BUW7 83 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 ABHD6Q9BV23 337 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 YIPF3Q9GZM5 350 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 SLC22A4Q9H015 551 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 POFUT1Q9H488 388 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 NIPAL2Q9H841 368 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 YAE1D1Q9NRH1 226 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 ZNF275Q9NSD4 429 aaPredicted RBP16.48■□□□□ 0.23
UPF1-212ENST00000601689 IL19Q9UHD0 177 aa16.48■□□□□ 0.23
UPF1-212ENST00000601689 YLPM1P49750 1951 aaKnown RBP16.47■□□□□ 0.23
UPF1-212ENST00000601689 GGT3PA6NGU5 568 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 ZSCAN5BA6NJL1 495 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 IQCF6A8MYZ5 107 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 NCR1O76036 304 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 TACSTD2P09758 323 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 CFL1P23528 166 aaKnown RBP16.47■□□□□ 0.23
UPF1-212ENST00000601689 OTX1P32242 354 aaPredicted RBP16.47■□□□□ 0.23
UPF1-212ENST00000601689 CX3CR1P49238 355 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 RSPO1Q2MKA7 263 aaPredicted RBP16.47■□□□□ 0.23
UPF1-212ENST00000601689 SLC16A9Q7RTY1 509 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 KRT77Q7Z794 578 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 OR52H1Q8NGJ2 320 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 OR10S1Q8NGN2 331 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 TMEM163Q8TC26 289 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 RNF133Q8WVZ7 376 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 S100A14Q9HCY8 104 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 IMPAD1Q9NX62 359 aa16.47■□□□□ 0.23
UPF1-212ENST00000601689 HIVEP2P31629 2446 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 IFNL4K9M1U5 179 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 PHYHO14832 338 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 TBX1O43435 398 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 SELENOFO60613 162 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 NAA10P41227 235 aaPredicted RBP16.46■□□□□ 0.23
UPF1-212ENST00000601689 SRP9P49458 86 aaKnown RBP16.46■□□□□ 0.23
UPF1-212ENST00000601689 ALDH3A2P51648 485 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 MZT1Q08AG7 82 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 GK2Q14410 553 aaPredicted RBP16.46■□□□□ 0.23
UPF1-212ENST00000601689 SNCBQ16143 134 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 TIGD6Q17RP2 521 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 C12orf73Q69YU5 71 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 MEPCEQ7L2J0 689 aaKnown RBP16.46■□□□□ 0.23
UPF1-212ENST00000601689 NAA40Q86UY6 237 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 MNTQ99583 582 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 GABARAPL3Q9BY60 117 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 MROQ9BYG7 248 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 OR10A2Q9H208 303 aa16.46■□□□□ 0.23
UPF1-212ENST00000601689 CSPG4Q6UVK1 2322 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 A0A096LNT2 108 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 IGHV4-61A0A0C4DH41 118 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 A8MV72 311 aaPredicted RBP16.45■□□□□ 0.22
UPF1-212ENST00000601689 PRKYO43930 277 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 BAG2O95816 211 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 SLC2A5P22732 501 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 DDOSTP39656 456 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 BHLHE23Q8NDY6 225 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 BBS1Q8NFJ9 593 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 OR8J1Q8NGP2 316 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 ASB17Q8WXJ9 295 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 GTF3AQ92664 365 aaKnown RBP16.45■□□□□ 0.22
UPF1-212ENST00000601689 RFKQ969G6 155 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 YIPF5Q969M3 257 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 PGAM5Q96HS1 289 aa16.45■□□□□ 0.22
UPF1-212ENST00000601689 IL4I1Q96RQ9 567 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms