RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	ZDHHC16	Q969W1	377 aa		14.71	□□□□□ -0.05
SHKBP1-223	ENST00000600552	C1orf147	Q96MC9	270 aa	Predicted RBP	14.71	□□□□□ -0.05
SHKBP1-223	ENST00000600552	UNKL	Q9H9P5	680 aa	Known RBP	14.71	□□□□□ -0.05
SHKBP1-223	ENST00000600552	SPAG4	Q9NPE6	437 aa		14.71	□□□□□ -0.05
SHKBP1-223	ENST00000600552	ABCD2	Q9UBJ2	740 aa		14.71	□□□□□ -0.05
SHKBP1-223	ENST00000600552	IGHV2-70D	A0A0C4DH43	119 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552		J3QW42	95 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	TMPRSS2	O15393	492 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	ACSM4	P0C7M7	580 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	OMG	P23515	440 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	PYCR1	P32322	319 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	MTNR1A	P48039	350 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	SMIM11A	P58511	58 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	HOXA4	Q00056	320 aa	Predicted RBP	14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	COX10	Q12887	443 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	GK2	Q14410	553 aa	Predicted RBP	14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	SLC9A3R2	Q15599	337 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	CLEC12A	Q5QGZ9	265 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	SLC18B1	Q6NT16	456 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	SHISA2	Q6UWI4	295 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	SLC26A10	Q8NG04	563 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	MCUR1	Q96AQ8	359 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	PYURF	Q96I23	114 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	ATF6B	Q99941	703 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	NUDT16L1	Q9BRJ7	211 aa	Known RBP	14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	MMADHC	Q9H3L0	296 aa	Predicted RBP	14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	CLN8	Q9UBY8	286 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	ATPIF1	Q9UII2	106 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	TMCC3	Q9ULS5	477 aa		14.7	□□□□□ -0.06
SHKBP1-223	ENST00000600552	OR6C68	A6NDL8	312 aa		14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	TVP23A	A6NH52	213 aa		14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	FAM20B	O75063	409 aa		14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	ZNF823	P16415	610 aa		14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	CA6	P23280	308 aa		14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	RPS27	P42677	84 aa	Known RBP	14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	TRAP1	Q12931	704 aa	Known RBP	14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	OR8G1	Q15617	311 aa		14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	ZNF404	Q494X3	552 aa		14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	BRD3OS	Q6XYD6	125 aa		14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	PGAP1	Q75T13	922 aa		14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	MRPL21	Q7Z2W9	205 aa	Known RBP	14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	LNX2	Q8N448	690 aa		14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	TECTB	Q96PL2	329 aa		14.69	□□□□□ -0.06
SHKBP1-223	ENST00000600552	MGAM2	Q2M2H8	2515 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	RRM2	P31350	389 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	GGT2	P36268	569 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	RAD23A	P54725	363 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	TPTE	P56180	551 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	FGF12	P61328	243 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	ECH1	Q13011	328 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	MAB21L1	Q13394	359 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	MPPED2	Q15777	294 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	SFRP4	Q6FHJ7	346 aa	Predicted RBP	14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	SPATC1	Q76KD6	591 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	CYB561A3	Q8NBI2	242 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	PROKR2	Q8NFJ6	384 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	OR51L1	Q8NGJ5	315 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	OR10S1	Q8NGN2	331 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	DHRS1	Q96LJ7	313 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	PCGF1	Q9BSM1	259 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	FUZ	Q9BT04	418 aa		14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	ZMAT3	Q9HA38	289 aa	Known RBP	14.68	□□□□□ -0.06
SHKBP1-223	ENST00000600552	KIR2DS1	A0A191URI9	304 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	GGT3P	A6NGU5	568 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	FABP3	P05413	133 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	RNASE1	P07998	156 aa	Known RBP	14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	IFNGR2	P38484	337 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	PAX2	Q02962	417 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	OR8B8	Q15620	311 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	OR2AE1	Q8NHA4	323 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	GNPDA2	Q8TDQ7	276 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	SPTSSA	Q969W0	71 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	UPRT	Q96BW1	309 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	NSMCE2	Q96MF7	247 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	MYLK2	Q9H1R3	596 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	EGLN3	Q9H6Z9	239 aa		14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	MRPL22	Q9NWU5	206 aa	Known RBP	14.67	□□□□□ -0.06
SHKBP1-223	ENST00000600552	C3orf80	F5H4A9	247 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552		M0R135	149 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	ARPC3	O15145	178 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	HOXA3	O43365	443 aa	Predicted RBP	14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	KCNAB3	O43448	404 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	GRP	P07492	148 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	TAF13	Q15543	124 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	DEFB112	Q30KQ8	113 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	WDR25	Q64LD2	544 aa	Predicted RBP	14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	RUSC1-AS1	Q66K80	236 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	COLCA1	Q6ZS62	124 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	ZBTB46	Q86UZ6	589 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	ZNF799	Q96GE5	643 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	MAP6	Q96JE9	813 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	CDRT15	Q96T59	188 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	RASSF4	Q9H2L5	321 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	GORASP2	Q9H8Y8	452 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	CENPM	Q9NSP4	180 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	CYB5R1	Q9UHQ9	305 aa		14.66	□□□□□ -0.06
SHKBP1-223	ENST00000600552	C5orf63	A6NC05	138 aa		14.65	□□□□□ -0.06
SHKBP1-223	ENST00000600552		A6NLC8	198 aa		14.65	□□□□□ -0.06
SHKBP1-223	ENST00000600552	CD300LB	A8K4G0	201 aa		14.65	□□□□□ -0.06

Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms