RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 PPP1R3CQ9UQK1 317 aa10.98□□□□□ -0.65
LIG1-212ENST00000596549 IGHV3-64DA0A0J9YX35 117 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 A8MXK9 166 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 F5H5P2 479 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 TMEM178BH3BS89 294 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 CYB5R3P00387 301 aaPredicted RBP10.97□□□□□ -0.65
LIG1-212ENST00000596549 FSHBP01225 129 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 HLA-DPB1P04440 258 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 SBK2P0C263 348 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 RAP2AP10114 183 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 SPI1P17947 270 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 PCK2Q16822 640 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 TMEM155Q4W5P6 130 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 LINC01590Q5TEZ4 76 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 DCAF12L2Q5VW00 463 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 TMEM179BQ7Z7N9 219 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 PEG10Q86TG7 708 aaKnown RBP10.97□□□□□ -0.65
LIG1-212ENST00000596549 IQCF1Q8N6M8 205 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 ATG16L2Q8NAA4 619 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 OR2T33Q8NG76 320 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 ZNF582Q96NG8 517 aaPredicted RBP10.97□□□□□ -0.65
LIG1-212ENST00000596549 CDADC1Q9BWV3 514 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 HCAR1Q9BXC0 346 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 PATZ1Q9HBE1 687 aaKnown RBP10.97□□□□□ -0.65
LIG1-212ENST00000596549 FAM53CQ9NYF3 392 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 OPN4Q9UHM6 478 aa10.97□□□□□ -0.65
LIG1-212ENST00000596549 STAB1Q9NY15 2570 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 CEACAM18A8MTB9 384 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 J3QLI3 93 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 SURF4O15260 269 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 RGS9O75916 674 aaPredicted RBP10.96□□□□□ -0.65
LIG1-212ENST00000596549 LCATP04180 440 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 SPARCP09486 303 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 ZNF823P16415 610 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 EPHA1P21709 976 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 ENTPD1P49961 510 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 SLC25A1P53007 311 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 RAD23AP54725 363 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 HOXA4Q00056 320 aaPredicted RBP10.96□□□□□ -0.65
LIG1-212ENST00000596549 ECH1Q13011 328 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 MAB21L1Q13394 359 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 DCXRQ7Z4W1 244 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 LRRC28Q86X40 367 aaPredicted RBP10.96□□□□□ -0.65
LIG1-212ENST00000596549 SPICQ8N5J4 248 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.96□□□□□ -0.65
LIG1-212ENST00000596549 ZNF511Q8NB15 262 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 DEFB108BQ8NET1 73 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 OR13G1Q8NGZ3 307 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 OR2AE1Q8NHA4 323 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 ST7LQ8TDW4 575 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 CANT1Q8WVQ1 401 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 THTPAQ9BU02 230 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 MMP26Q9NRE1 261 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 BAIAP2Q9UQB8 552 aa10.96□□□□□ -0.65
LIG1-212ENST00000596549 WNK2Q9Y3S1 2297 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 ARRDC5A6NEK1 342 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 FAM183AA6NL82 134 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 FOXH1O75593 365 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 ZNF205O95201 554 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 CST1P01037 141 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 MDH2P40926 338 aaKnown RBP10.95□□□□□ -0.66
LIG1-212ENST00000596549 PMELP40967 661 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 SLC6A9P48067 706 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 TPTEP56180 551 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 ZNF92Q03936 586 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 FAM201AQ5SY85 155 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 GLYATL3Q5SZD4 288 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 PRAMEF6Q5VXH4 476 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 LIPNQ5VXI9 398 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 CD300LDQ6UXZ3 194 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 PGAP1Q75T13 922 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 TRPM8Q7Z2W7 1104 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 MOGAT3Q86VF5 341 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 HS3ST5Q8IZT8 346 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 OR6K6Q8NGW6 343 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 DVL3Q92997 716 aaPredicted RBP10.95□□□□□ -0.66
LIG1-212ENST00000596549 SLCO4A1Q96BD0 722 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 SLAMF6Q96DU3 332 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 LRGUKQ96M69 825 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 FEVQ99581 238 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 CHID1Q9BWS9 393 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 OCEL1Q9H607 264 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 MED20Q9H944 212 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 CMC2Q9NRP2 79 aa10.95□□□□□ -0.66
LIG1-212ENST00000596549 POLR3KQ9Y2Y1 108 aaPredicted RBP10.95□□□□□ -0.66
LIG1-212ENST00000596549 PPIAL4EA0A075B759 164 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 PPIAL4CA0A0B4J2A2 164 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 DHRS12A0PJE2 317 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 AQP12BA6NM10 295 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 ZNF878C9JN71 531 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 PPIAL4DF5H284 164 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 TRAPPC2LH3BP13 241 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 PPIAL4FP0DN26 164 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 SLC2A1P11166 492 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 ZNF3P17036 446 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 GATA3P23771 443 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 FMO3P31513 532 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 GRK5P34947 590 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 CD200P41217 278 aa10.94□□□□□ -0.66
LIG1-212ENST00000596549 GATA4P43694 442 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms