RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 SLC37A3Q8NCC5 494 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 DEFB108BQ8NET1 73 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 OR52L1Q8NGH7 329 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 OR9Q1Q8NGQ5 310 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 OR2AJ1Q8NGZ0 328 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 MAGIXQ9H6Y5 334 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 TMEM165Q9HC07 324 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 PCDHB10Q9UN67 800 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 POLR3KQ9Y2Y1 108 aaPredicted RBP9.09□□□□□ -0.95
VPS39-208ENST00000564994 U3KQV3 271 aa9.09□□□□□ -0.95
VPS39-208ENST00000564994 CEACAM18A8MTB9 384 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 A8MXK9 166 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 M0R135 149 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 SOX14O95416 240 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 FAM107AO95990 144 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 LCATP04180 440 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 GYPBP06028 91 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 WNT2P09544 360 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 CLUP10909 449 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 ZNF823P16415 610 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 ZNF12P17014 697 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 MDH2P40926 338 aaKnown RBP9.08□□□□□ -0.96
VPS39-208ENST00000564994 SRP9P49458 86 aaKnown RBP9.08□□□□□ -0.96
VPS39-208ENST00000564994 HILS1P60008 231 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 SCGB2A2Q13296 93 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 MAB21L1Q13394 359 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 CRMP1Q14194 572 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 MICAQ29983 383 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 SNAI3Q3KNW1 292 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 FAM201AQ5SY85 155 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 OR2T5Q6IEZ7 315 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 USP43Q70EL4 1123 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 MOGAT3Q86VF5 341 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 DHFR2Q86XF0 187 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 ARHGAP24Q8N264 748 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 LNX2Q8N448 690 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 TEX29Q8N6K0 151 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 ZNF511Q8NB15 262 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 PROKR2Q8NFJ6 384 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 OR2T4Q8NH00 348 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 OR2T29Q8NH02 315 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 NANPQ8TBE9 248 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 ZNF418Q8TF45 676 aaPredicted RBP9.08□□□□□ -0.96
VPS39-208ENST00000564994 ZFAND2BQ8WV99 257 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 C22orf15Q8WYQ4 148 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 SLCO4A1Q96BD0 722 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 ZNF799Q96GE5 643 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 CLPTM1LQ96KA5 538 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 SLC6A7Q99884 636 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 RBM4Q9BWF3 364 aaKnown RBP9.08□□□□□ -0.96
VPS39-208ENST00000564994 TSSK6Q9BXA6 273 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 HCAR1Q9BXC0 346 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 NMNAT2Q9BZQ4 307 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 MUC13Q9H3R2 512 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 ESM1Q9NQ30 184 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 DDX28Q9NUL7 540 aaKnown RBP9.08□□□□□ -0.96
VPS39-208ENST00000564994 TBC1D23Q9NUY8 699 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 TMEM100Q9NV29 134 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 ARMC1Q9NVT9 282 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 KCNG2Q9UJ96 466 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 COMMD3-BMI1R4GMX3 469 aa9.08□□□□□ -0.96
VPS39-208ENST00000564994 CALB2P22676 271 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 OTX1P32242 354 aaPredicted RBP9.07□□□□□ -0.96
VPS39-208ENST00000564994 RAD23AP54725 363 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 TPTEP56180 551 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 HOXA4Q00056 320 aaPredicted RBP9.07□□□□□ -0.96
VPS39-208ENST00000564994 ZNF92Q03936 586 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 ZNF154Q13106 437 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 PCK2Q16822 640 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 ZNF181Q2M3W8 571 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 TUSC1Q2TAM9 212 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 KLF17Q5JT82 389 aaPredicted RBP9.07□□□□□ -0.96
VPS39-208ENST00000564994 PGAP1Q75T13 922 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 DCXRQ7Z4W1 244 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 OR2AE1Q8NHA4 323 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 DVL3Q92997 716 aaPredicted RBP9.07□□□□□ -0.96
VPS39-208ENST00000564994 NIPSNAP1Q9BPW8 284 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 DGCR6LQ9BY27 220 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 REEP1Q9H902 201 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 TAS2R1Q9NYW7 299 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 SAMHD1Q9Y3Z3 626 aaKnown RBP9.07□□□□□ -0.96
VPS39-208ENST00000564994 INSIG2Q9Y5U4 225 aa9.07□□□□□ -0.96
VPS39-208ENST00000564994 CD300LBA8K4G0 201 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 IFNL4K9M1U5 179 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 HAX1O00165 279 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 ACOT8O14734 319 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 SPARCP09486 303 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 SPI1P17947 270 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 CD200P41217 278 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 GATA4P43694 442 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 ENTPD1P49961 510 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 SLC25A1P53007 311 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 PAX2Q02962 417 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 MALLQ13021 153 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 MPPED2Q15777 294 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 ZNF404Q494X3 552 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 FAM98BQ52LJ0 330 aaKnown RBP9.06□□□□□ -0.96
VPS39-208ENST00000564994 GLYATL3Q5SZD4 288 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 LINC01590Q5TEZ4 76 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 PRAMEF6Q5VXH4 476 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms