RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 WDR25Q64LD2 544 aaPredicted RBP4.46□□□□□ -1.7
VPS35-205ENST00000563984 STUMQ69YW2 141 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 PRR27Q6MZM9 219 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 ZNF613Q6PF04 617 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 WDR74Q6RFH5 385 aaPredicted RBP4.46□□□□□ -1.7
VPS35-205ENST00000563984 MEPCEQ7L2J0 689 aaKnown RBP4.46□□□□□ -1.7
VPS35-205ENST00000563984 DHDDSQ86SQ9 333 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 NIT1Q86X76 327 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 TMEM25Q86YD3 366 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 SLC22A15Q8IZD6 547 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 SMIM20Q8N5G0 67 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 TMEM217Q8N7C4 229 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 OR2Z1Q8NG97 314 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 OR6N1Q8NGY5 312 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 OR13G1Q8NGZ3 307 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 SMAP2Q8WU79 429 aaPredicted RBP4.46□□□□□ -1.7
VPS35-205ENST00000563984 RAB2BQ8WUD1 216 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 LCN9Q8WX39 176 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 UCN3Q969E3 161 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 C10orf35Q96D05 121 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 HPDLQ96IR7 371 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 ITCHQ96J02 903 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 ZNF582Q96NG8 517 aaPredicted RBP4.46□□□□□ -1.7
VPS35-205ENST00000563984 GFM1Q96RP9 751 aaKnown RBP4.46□□□□□ -1.7
VPS35-205ENST00000563984 SORT1Q99523 831 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 SNHG12Q9BXW3 62 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 CTDSP1Q9GZU7 261 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 LAT2Q9GZY6 243 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 ARL6Q9H0F7 186 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 NANOGQ9H9S0 305 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 ISYNA1Q9NPH2 558 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 PRSS16Q9NQE7 514 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 CLN6Q9NWW5 311 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 SCN3BQ9NY72 215 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 CD84Q9UIB8 345 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 HACL1Q9UJ83 578 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 FBXL2Q9UKC9 423 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 PCYT1BQ9Y5K3 369 aaPredicted RBP4.46□□□□□ -1.7
VPS35-205ENST00000563984 A3GALT2U3KPV4 340 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 KIF20BQ96Q89 1820 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 ABCB11O95342 1321 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 TP53BP1Q12888 1972 aaPredicted RBP4.45□□□□□ -1.7
VPS35-205ENST00000563984 SHISA7A6NL88 538 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 RNF212BA8MTL3 300 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 DCTN6O00399 190 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 CLDN5O00501 218 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 CTSVO60911 334 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 NEURL1O76050 574 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 IGHV2-5P01817 119 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 CRYBA1P05813 215 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 WNT2P09544 360 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 GIPP09681 153 aaPredicted RBP4.45□□□□□ -1.7
VPS35-205ENST00000563984 ANKRD34CP0C6C1 535 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 ADORA3P0DMS8 318 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 T-ENOLP0DO92 83 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 VPREB1P12018 145 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 ZNF35P13682 527 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 ATP1B2P14415 290 aaPredicted RBP4.45□□□□□ -1.7
VPS35-205ENST00000563984 ARSBP15848 533 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 IL7RP16871 459 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 HTR1FP30939 366 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 HSD17B3P37058 310 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 PRLHRP49683 370 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 ASCL1P50553 236 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 DAP3P51398 398 aaKnown RBP4.45□□□□□ -1.7
VPS35-205ENST00000563984 TAS2R43P59537 309 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 RAB10P61026 200 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 RHOAP61586 193 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 ACKR1Q16570 336 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 PRSS8Q16651 343 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 DCAF4L1Q3SXM0 396 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 FAM174BQ3ZCQ3 159 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 CYBRD1Q53TN4 286 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 SPIN4Q56A73 249 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 TMEM128Q5BJH2 165 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 ALG10Q5BKT4 473 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 ALG10BQ5I7T1 473 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 TEX38Q6PEX7 206 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 ZNF620Q6ZNG0 422 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 DEFB128Q7Z7B8 93 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 LAX1Q8IWV1 398 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 ZNF595Q8IYB9 648 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 UBAC2Q8NBM4 344 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 SDR9C7Q8NEX9 313 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 OR4D5Q8NGN0 318 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 OR4A4PQ8NGN8 299 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 OR1P1Q8NH06 330 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 DNASE2BQ8WZ79 361 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 SLC7A6Q92536 515 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 RAB8BQ92930 207 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 LGALS12Q96DT0 336 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 SEH1LQ96EE3 360 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 SMIM8Q96KF7 97 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 CPXM1Q96SM3 734 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 ACOX2Q99424 681 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 TMEM204Q9BSN7 226 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 RAB11FIP5Q9BXF6 653 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 REG4Q9BYZ8 158 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 DPAGT1Q9H3H5 408 aa4.45□□□□□ -1.7
VPS35-205ENST00000563984 SPANXB1Q9NS25 103 aaPredicted RBP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms