RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 GPR148Q8TDV2 347 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 ST7LQ8TDW4 575 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 RNF128Q8TEB7 428 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 ZNF431Q8TF32 576 aaPredicted RBP12.65□□□□□ -0.38
VPS33A-209ENST00000544349 ROBO4Q8WZ75 1007 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 TMEM54Q969K7 222 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 S100A16Q96FQ6 103 aaKnown RBP12.65□□□□□ -0.38
VPS33A-209ENST00000544349 SLX1AQ9BQ83 275 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 GLTPQ9NZD2 209 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 GTF2A1LQ9UNN4 478 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 ETV7Q9Y603 341 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 SSNA1O43805 119 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 CSNK1A1P48729 337 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 RAG2P55895 527 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 NHLH1Q02575 133 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 OR7E24Q6IFN5 339 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 FDX2Q6P4F2 183 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 FGD2Q7Z6J4 655 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 TMEM123Q8N131 208 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 TMEM178AQ8NBL3 297 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 FCAMRQ8WWV6 532 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 RAB40AQ8WXH6 277 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 GPR137Q96N19 417 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 SEC22CQ9BRL7 303 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 SLC6A15Q9H2J7 730 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 SEC61A2Q9H9S3 476 aa12.65□□□□□ -0.38
VPS33A-209ENST00000544349 ZNF716A6NP11 495 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 DOK2O60496 412 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF432O94892 652 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 KDM4BO94953 1096 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 ITGA5P08648 1049 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 RAD52P43351 418 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 TNFSF10P50591 281 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 RIDAP52758 137 aaKnown RBP12.64□□□□□ -0.39
VPS33A-209ENST00000544349 PPIAP62937 165 aaKnown RBP12.64□□□□□ -0.39
VPS33A-209ENST00000544349 RASGEF1BQ0VAM2 473 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 ABLIM2Q6H8Q1 611 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 IGFL2Q6UWQ7 119 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 SEZ6L2Q6UXD5 910 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 OR6N1Q8NGY5 312 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 CPNE4Q96A23 557 aaPredicted RBP12.64□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF845Q96IR2 970 aaPredicted RBP12.64□□□□□ -0.39
VPS33A-209ENST00000544349 DLL4Q9NR61 685 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 STEAP1Q9UHE8 339 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 CYB5R1Q9UHQ9 305 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 ING4Q9UNL4 249 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 LRP12Q9Y561 859 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 GVINP1Q7Z2Y8 2422 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 ALDOBP05062 364 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 PSMB1P20618 241 aaKnown RBP12.64□□□□□ -0.39
VPS33A-209ENST00000544349 CDAP32320 146 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 MNDAP41218 407 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF133P52736 654 aaPredicted RBP12.64□□□□□ -0.39
VPS33A-209ENST00000544349 CLDN18P56856 261 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 GUCA2AQ02747 115 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 DEFB109BQ30KR1 87 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 ELFN2Q5R3F8 820 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 PHYHD1Q5SRE7 291 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 CORO6Q6QEF8 472 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 OR51D1Q8NGF3 324 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 ACKR4Q9NPB9 350 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 RABL2AQ9UBK7 228 aaPredicted RBP12.64□□□□□ -0.39
VPS33A-209ENST00000544349 FBXL3Q9UKT7 428 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 RABL2BQ9UNT1 228 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 CSAG2Q9Y5P2 127 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 FLVCR1Q9Y5Y0 555 aa12.64□□□□□ -0.39
VPS33A-209ENST00000544349 ACOT7O00154 380 aa12.63□□□□□ -0.39
VPS33A-209ENST00000544349 SULT1B1O43704 296 aa12.63□□□□□ -0.39
VPS33A-209ENST00000544349 ECDO95905 644 aaPredicted RBP12.63□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF708P17019 499 aa12.63□□□□□ -0.39
VPS33A-209ENST00000544349 ANXA7P20073 488 aaKnown RBP12.63□□□□□ -0.39
VPS33A-209ENST00000544349 SLC10A1Q14973 349 aa12.63□□□□□ -0.39
VPS33A-209ENST00000544349 KCNMB1Q16558 191 aa12.63□□□□□ -0.39
VPS33A-209ENST00000544349 C10orf128Q5T292 105 aa12.63□□□□□ -0.39
VPS33A-209ENST00000544349 DEGS2Q6QHC5 323 aa12.63□□□□□ -0.39
VPS33A-209ENST00000544349 FAM109AQ8N4B1 249 aa12.63□□□□□ -0.39
VPS33A-209ENST00000544349 PNPLA2Q96AD5 504 aa12.63□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF775Q96BV0 537 aaPredicted RBP12.63□□□□□ -0.39
VPS33A-209ENST00000544349 INTS12Q96CB8 462 aaKnown RBP12.63□□□□□ -0.39
VPS33A-209ENST00000544349 FOXD3Q9UJU5 478 aaPredicted RBP12.63□□□□□ -0.39
VPS33A-209ENST00000544349 NPTNQ9Y639 398 aa12.63□□□□□ -0.39
VPS33A-209ENST00000544349 DCDC2BA2VCK2 349 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 EFSO43281 561 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 CYTIPO60759 359 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 TMEM127O75204 238 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 RAF1P04049 648 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 POU3F4P49335 361 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 SRYQ05066 204 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 DNM1P46Q6ZS02 220 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF767PQ75MW2 155 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 NLRC3Q7RTR2 1065 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 PLPP7Q8NBV4 271 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 RNF133Q8WVZ7 376 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 MRI1Q9BV20 369 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 ACTR6Q9GZN1 396 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 C1orf198Q9H425 327 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 RANBP3Q9H6Z4 567 aaPredicted RBP12.62□□□□□ -0.39
VPS33A-209ENST00000544349 HEXA-AS1Q9H8Q6 139 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 CA10Q9NS85 328 aa12.62□□□□□ -0.39
VPS33A-209ENST00000544349 KLK13Q9UKR3 277 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms