RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 SULT1C4O75897 302 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ATE1O95260 518 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 PIPP12273 146 aaPredicted RBP12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 SELENOVP59797 346 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 PSMA6P60900 246 aaKnown RBP12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ST3GAL4Q11206 333 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 MALLQ13021 153 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 SNAI3Q3KNW1 292 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 TP53I3Q53FA7 332 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 COLCA1Q6ZS62 124 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ZNF786Q8N393 782 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 STX19Q8N4C7 294 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 SYNPRQ8TBG9 265 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 MRPL24Q96A35 216 aaKnown RBP12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 PGAM5Q96HS1 289 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 CCL19Q99731 98 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 POFUT1Q9H488 388 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 CHCHD3Q9NX63 227 aaKnown RBP12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ERVK13-1Q9NX77 482 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 CNOT2Q9NZN8 540 aaKnown RBP12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 GTF2A1LQ9UNN4 478 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 TPRKBQ9Y3C4 175 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 CACNA1DQ01668 2161 aa12.45□□□□□ -0.42
TNFRSF1A-216ENST00000543995 NBPF19A0A087WUL8 3843 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 RPP14O95059 124 aaKnown RBP12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 SOD3P08294 240 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 TACSTD2P09758 323 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 DANCRP0C864 163 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 TUBG1P23258 451 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 DCTDP32321 178 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 KLF3P57682 345 aaPredicted RBP12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 GALEQ14376 348 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 CDONQ4KMG0 1287 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 OR52H1Q8NGJ2 320 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 KLF14Q8TD94 323 aaPredicted RBP12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 MARS2Q96GW9 593 aaKnown RBP12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 C4orf36Q96KX1 117 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 LURAP1Q96LR2 239 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 MRPL37Q9BZE1 423 aaKnown RBP12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 TUBG2Q9NRH3 451 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 CBLN4Q9NTU7 201 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 DIMT1Q9UNQ2 313 aaKnown RBP12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 EXOSC1Q9Y3B2 195 aaKnown RBP12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 PCDHGB5Q9Y5G0 923 aa12.44□□□□□ -0.42
TNFRSF1A-216ENST00000543995 A0A1W2PPW3 197 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 B9A039 149 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 LOC110117498-PIK3R3F6TDL0 507 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 J3QLW9 94 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 CCDC159P0C7I6 412 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ZNF250P15622 560 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ZNF19P17023 458 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 MPV17P39210 176 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 OR12D2P58182 307 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 SNRPD2P62316 118 aaKnown RBP12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 MVKQ03426 396 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 HLXQ14774 488 aaPredicted RBP12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 TIGD6Q17RP2 521 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 MSMPQ1L6U9 139 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 GFOD2Q3B7J2 385 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ZNF684Q5T5D7 378 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 LIPNQ5VXI9 398 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 MBNL2Q5VZF2 373 aaKnown RBP12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 PAMR1Q6UXH9 720 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 KCTD20Q7Z5Y7 419 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 LRP11Q86VZ4 500 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 MYDGFQ969H8 173 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 JAM3Q9BX67 310 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 OR10A2Q9H208 303 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ACOXLQ9NUZ1 547 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 PLEKHA6Q9Y2H5 1048 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 R4GMQ9 66 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ROS1P08922 2347 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 PLCE1Q9P212 2302 aa12.43□□□□□ -0.42
TNFRSF1A-216ENST00000543995 H3BSA7 217 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 XRCC2O43543 280 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 CLPTM1O96005 669 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 RAF1P04049 648 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 BMP4P12644 408 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ETV1P50549 477 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 MFGE8Q08431 387 aaPredicted RBP12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 EFNB3Q15768 340 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ALKBH6Q3KRA9 238 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 RBM48Q5RL73 367 aaKnown RBP12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 GLYATL3Q5SZD4 288 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 MRPL21Q7Z2W9 205 aaKnown RBP12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 KLHL36Q8N4N3 616 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 OR2AE1Q8NHA4 323 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 CMBLQ96DG6 245 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 FKBP14Q9NWM8 211 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 FAM206AQ9NX38 181 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 UBAP1Q9NZ09 502 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 MYEF2Q9P2K5 600 aaKnown RBP12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ST6GALNAC2Q9UJ37 374 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 BLOC1S6Q9UL45 172 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 SNX5Q9Y5X3 404 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 HECTD1Q9ULT8 2610 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 DCHS2Q6V1P9 2916 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 C5orf63A6NC05 138 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 ACOD1A6NK06 481 aa12.42□□□□□ -0.42
TNFRSF1A-216ENST00000543995 TIMM8AO60220 97 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms